LOCUS CAA94917.5 1409 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans BRCA-2_OB1 domain-containing protein
protein.
ACCESSION BX284606-3456
PROTEIN_ID CAA94917.5
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="F23D12.2"
/locus_tag="CELE_F23D12.2"
/standard_name="F23D12.2"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00009086"
/db_xref="EnsemblGenomes-Tr:F23D12.2"
/db_xref="UniProtKB/TrEMBL:Q19761"
/db_xref="WormBase:WBGene00009086"
intron_pos 103:0 (1/12)
intron_pos 178:0 (2/12)
intron_pos 202:0 (3/12)
intron_pos 446:0 (4/12)
intron_pos 534:0 (5/12)
intron_pos 637:0 (6/12)
intron_pos 740:0 (7/12)
intron_pos 827:0 (8/12)
intron_pos 970:0 (9/12)
intron_pos 1033:0 (10/12)
intron_pos 1298:0 (11/12)
intron_pos 1367:0 (12/12)
BEGIN
1 MSEKDEKTET SIKSDMSEIN VLLQKSKMAD LRDAQRGQHT SIMTSLFSNL WSYCGTWSSL
61 VSEDYLSKIE TSAFSSATVA TTILCTSGGA PTLPAWKLNL LPDASILSTK SVPMLLWDVD
121 AANTSTHSMG LKKQEFTGLA ISTKSTIYIR DSDDIILCAE PLLIDPKLVT NLDFKFSQIT
181 SQIISPTKGP FDTENVGIEE IKSSSSNQPA STFPTPVKLN PAIARIMGKS RTPNKLMRKC
241 KKDAENQRTL AKMEQSLQPP SNFLANDYLV RESERAAHQQ EASSSTSQFS LDGTKIINSP
301 KTPFSVNGVG SLPFEEGIVL KAPQNSPAKE HEILEGEQQI SKVFVSQPRV ENLSVMEHTG
361 KESLLNENIN SSIEDTTKIS STEDVGITVL CVPHQELIPP LELSETSKCQ VHKQGNKKVL
421 ENVLQPELKT PVTFSKDSVK REVLKAPLEI SPARGDEIAA AEKRMKEYLE KKNLLSRMLP
481 TQVQSTTASL NKKTGTFAAY ENQAQEYKSE QAECSKLTNT SHSSSPLRTF SFENKMDISP
541 ARENEIAAAE KRMKDYLEKK NLVSPLVPAY ATQAQPTIVS IIEKTAAFGL PSGIEFASER
601 GVICTQDSEA YFDCAKVPTP VKLSENSSLL KTHMSKSKME ISPARGDEIA AAERRMKEYL
661 QKKNISSPLV PAFQAQPTAA NLNEKTVTFG VTEGFDLVDG RAVVGPETHP QEYKTRQIGS
721 STVSTSIESS SPMKTSLFEN KMEISPARGD EIAAAEKRMK EYLEKKKLLA PLVPTFASQA
781 QPTIVSIIEK TDAFSLPRGI EIANAEVSTP VKLSEISSLL RPYCSERKMQ IESGEGYQIV
841 TAQKPTTEDL ENNYVGSQLM SLPTSQACST SSRICTTRKT FSSDTSTRIY PTTLEHLPAN
901 SKSVQVPVTK DNHVLVVSSK TTSTVRSSFS EQENDENKEN QHDPKLLSLA RTPLALSKFD
961 SSREKTASKP LEISPARSDE IAMAEKRMKE YLEKKKCLVK PVSIVPSTST NATSKPVSAE
1021 ENNIKLGSTG KSTTLHISSQ NLQSSHTTDC VVNHRNPSEY NNGGTKGMSL SQTLPQTPIA
1081 LSSVVESVEV ISCKVSTEIS PAKADELVAA EKRMKEFLEK KKNAKQRFPI PKAVNSSGNS
1141 TRSIVIEETN TVKTELNARK AAEINLQITK PPISTIPVVQ PSTPSSTRKI LVSNVKLPAI
1201 LQSKDEYIAS QKLMQDLREK TQNLAKQLSI ISAQASRKSS DEVIHGKTGE MEKRRQTYGT
1261 IPSQIIPTSS QISNTSSKVS SLVSHGRTKL KNTTTTKIPS GVNKNGLHAN TCRDPTFQRS
1321 NHKARDLKPS DGKWLERNMA QLFGRYVPLK QSSHNSTSGV VECSNEKSDI APVDACTSSN
1381 PETEKPSDGS GFRIISIFDH STKTIHFPL
//