LOCUS CAA94916.1 867 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans JmjC domain-containing protein protein. ACCESSION BX284606-3464 PROTEIN_ID CAA94916.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="jmjd-3.2" /locus_tag="CELE_F23D12.5" /standard_name="F23D12.5" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00009089" /db_xref="EnsemblGenomes-Tr:F23D12.5" /db_xref="GOA:Q19760" /db_xref="InterPro:IPR003347" /db_xref="UniProtKB/TrEMBL:Q19760" /db_xref="WormBase:WBGene00009089" intron_pos 38:1 (1/7) intron_pos 118:1 (2/7) intron_pos 282:0 (3/7) intron_pos 517:1 (4/7) intron_pos 580:0 (5/7) intron_pos 777:2 (6/7) intron_pos 841:2 (7/7) BEGIN 1 MDSGGQGSGS QDQFEKTEQL VDAQYPVPTT LKPDFFTDKT EIDERNRVDQ CFDNDQPFNG 61 NNSKLLESES HKLGESSTEP SGTTISSGNY EIAEDCSDET EQFIDPDNQV PAANFITNDC 121 TTIEQTAKIQ EESGTDSLIV STNDSGSTNE QILPTQSNDA DFRERIEIDG RDQVDQHGNS 181 YPPISGNNSK LRKSESHEQG EFLVGPSRKR KPETLIETKS KKRKSARGRP SNKLNQFQIH 241 QVSSDWNANA FLQFARRDAA GTILESEEAK KTIDAQLEHF SEPSCSTDVS VHVVRDNENL 301 GLVTNKLRSL AIPPISNLPS DLPSLYKLPK LFLTGATFMD VSKSKGKQVI TKASKWIKSG 361 KNLVYETSGC SELFDETTKF NTDGKIEENT SEEYTNKDQY RLPVPIYNIE NNSDETSNFI 421 KNIVNTTTMC IFRGIEEAFG MDRQTFDIST LAPLYPDYPL KIRRQMPQSS ATNFYMNDKN 481 TVQRLGNAWA VFDFEGVTQL RDFAKNYESL KDIGRSAYQA ILRNPSAFSE VMDDMKKQIK 541 ENTIPLSPEH KLTVHENATV LAFGTNIDLD DQRFKEQLDE IKKLPDCLRP DGAGNLLNFA 601 QESLAGLNKP QVYCKPPGAR TTAHLENQAL GSININHGPG DCVWYGVPME YSGRMEVLIK 661 KHRLNVYKSG YWPSEQELRN EKIPSQKFLQ KPGDMVYVGI GTFHWVQSND FAINVSWNVA 721 QPTFNQLAAA MVIHDHNISS KATTLMPIEP IVWKMAEDGV EAEDENIFLA RKAIMLKSLA 781 KSQFEFDFAI QENMLIRSAK NEKSIIPVER CSIQKCREVL FNMITLDNKQ NPFCLNCIVK 841 GKVKATAFQR RDIADLVKIF DEFKWVS //