LOCUS CAA94223.2 733 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans PH domain-containing protein protein. ACCESSION BX284606-3303 PROTEIN_ID CAA94223.2 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="obr-3" /locus_tag="CELE_ZK1086.1" /standard_name="ZK1086.1a" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00014215" /db_xref="EnsemblGenomes-Tr:ZK1086.1a" /db_xref="GOA:G5EC19" /db_xref="InterPro:IPR000648" /db_xref="InterPro:IPR001849" /db_xref="InterPro:IPR011993" /db_xref="InterPro:IPR037239" /db_xref="UniProtKB/TrEMBL:G5EC19" /db_xref="WormBase:WBGene00014215" intron_pos 14:0 (1/10) intron_pos 78:0 (2/10) intron_pos 108:0 (3/10) intron_pos 146:0 (4/10) intron_pos 171:0 (5/10) intron_pos 253:0 (6/10) intron_pos 315:2 (7/10) intron_pos 511:0 (8/10) intron_pos 601:2 (9/10) intron_pos 681:0 (10/10) BEGIN 1 MEEFDENSRK SLKKQKKEYR DEKKRVNDEL LSALRDPTVV VMADTLKIRG ALKRWNRYYC 61 VLKPGLLILY KHKKADRGDW VGTVLLNHCE LIERPSKKDG FCFKLFHPMD MSIWGNRGPL 121 GQSFGSFTLN PLNTSFLICR APSDQAGRCW MDALELSFKC TGLLKKTMNE LDDKNGDSSM 181 NDGQRDESRM SRDSDGDDTR ELAVSETDAE KHFQEIDDVQ DEDHEDGKMS ETSDTIREAF 241 TESAWIPSPK EVFGPDGSLT EEVGEENKSL IWTLLKQIRP GMDLSKVVLP TFILEPRSFL 301 EKLADYYYHA DLISEAVAEP DPFQRIVKVT KFFLSGFYKK PKGLKKPYNP ILGETFRCKW 361 EHPDGSTTFY MAEQVSHHPP VSSLFITNRK AGFNISGTIL AKSKYYGNSL SAILAGKLRL 421 TLLNLGETYI VNLPYANCKG IMIGTMTMEL GGEVNIECEK TGYRTTLDFK LKPMLGGAYN 481 QIEGSIKYGS DRLASIEGAW DGVIRIKGPD GKKELWNPTP EVIKTRLPRY EINMDEQGEW 541 ESAKLWRHVT EAISNEDQYK ATEEKTALEN DQRARAKSGI PHETKFFKKQ HGDDYVYIHA 601 DYRPWDNNND IQQIENNYVV KTISRHSKRK TGNSEQLGSD NTSEASESDE EVIEPKIKKK 661 EIVPAKSKPI TPEVADERIK EMERKFELAI RRMEAANERQ SSRTLNAIQS TLLFVFVVTS 721 VVQSIFMFFM LRK //