LOCUS CAA94120.2 996 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Peroxisomal ATPase PEX1 protein.
ACCESSION BX284606-3432
PROTEIN_ID CAA94120.2
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="prx-1"
/locus_tag="CELE_C11H1.4"
/standard_name="C11H1.4a"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00004191"
/db_xref="EnsemblGenomes-Tr:C11H1.4a"
/db_xref="GOA:G5ED99"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR003959"
/db_xref="InterPro:IPR003960"
/db_xref="InterPro:IPR015342"
/db_xref="InterPro:IPR025653"
/db_xref="InterPro:IPR027417"
/db_xref="InterPro:IPR029067"
/db_xref="UniProtKB/TrEMBL:G5ED99"
/db_xref="WormBase:WBGene00004191"
intron_pos 39:0 (1/23)
intron_pos 91:0 (2/23)
intron_pos 119:0 (3/23)
intron_pos 157:1 (4/23)
intron_pos 199:0 (5/23)
intron_pos 253:1 (6/23)
intron_pos 310:0 (7/23)
intron_pos 353:0 (8/23)
intron_pos 394:1 (9/23)
intron_pos 430:0 (10/23)
intron_pos 484:2 (11/23)
intron_pos 511:1 (12/23)
intron_pos 544:1 (13/23)
intron_pos 596:1 (14/23)
intron_pos 645:0 (15/23)
intron_pos 694:1 (16/23)
intron_pos 723:2 (17/23)
intron_pos 750:0 (18/23)
intron_pos 795:0 (19/23)
intron_pos 816:2 (20/23)
intron_pos 865:1 (21/23)
intron_pos 900:0 (22/23)
intron_pos 953:1 (23/23)
BEGIN
1 MNQSYPAFVS FHSLSNCFAY AKLLTAINNA NDLSSANEKF GGPLLGNFRM KSCDNPNIYC
61 DIQVFGQFPF TNVFINSVFA EVSGFHEKQE VILEKMESKT YCSHIEVAPR TEDDYSVIAQ
121 SQSSIENEFL NQIRLVSQNM IIPHFLSPGV YVQFRILNIV PASNKPVMLN NDTELHVQTV
181 TEGSQNDEKA TMAQKVSNIV QDLSMQGFLS NYVINLEKTP IIGRVLPKKT VELWVKSGLE
241 KLDKSTIYIP GKESCLYSEH GIVEIRSQGR GENEERFQFF YLHRSPNIYL RNQSNELDAS
301 LSHMFESLQL ENRCHCVEGT NTLEPYMNIK IFGVTQNRIC TLRYCEIMME KETFQWVKEF
361 ELTNVLTKSL HSELQGNPIL LSVEGKELDV AVDDKAIRLK VVPSMKGLVK RVTENTCFLF
421 DLTTELIFQQ LGDLKQKHGD TENTRRRRKR TEEAEASEQI PQKPETSTME NFGFAQNKHF
481 VQIGSHSKLL SELDKVCCGG KQHVMVLGGN GSGKTTFIKK LARRLSHNSS VTFCKMVPCA
541 LLKGRSADII EKLLSDTLHE MEVKKPSCLF LDDFDVILPQ IDQEQRHLAM EKVVSVFAQK
601 LRTTEVSVVL VAQRLSSLND GFVEQVMRAR PIVSRKIELE QLTKEDRCEI FETFLDLPEN
661 SDIISEIVKK SDGYTFSEIE KLAVSINVEC AIKGVKYITE IEVEKAFECF VAGKMGKIED
721 GQVLPTMEDV GGMFEQKKLL EQVIIWPRKY PQLFESVGVP VSKGILLHGP SGCGKTLLAN
781 ATISNSNFSV VNVKGPELLS KYIGASEENV RLVFEKARSC APCILFFDEL DSLAPKRGHD
841 STGVTDRVVN QLLTELDGAE GGMKGVIILG CTSRIDLIDD ALLRPGRFDH HVYCGHPEKT
901 ERLDIMKVLT NKLKPTDVDF ECLAQKTDGW SGADLQLLFT NAQFYNARQI AKEEDGLEED
961 NVPIDQASIE SVFNDSIPKP KRSQVDNRIG QKVTLA
//