LOCUS CAA93856.2 893 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Fibronectin type-III domain-containing
protein protein.
ACCESSION BX284602-3225
PROTEIN_ID CAA93856.2
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 15279421)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="II"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="C18E9.7"
/locus_tag="CELE_C18E9.7"
/standard_name="C18E9.7"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00007687"
/db_xref="EnsemblGenomes-Tr:C18E9.7"
/db_xref="InterPro:IPR003961"
/db_xref="InterPro:IPR013783"
/db_xref="InterPro:IPR036116"
/db_xref="UniProtKB/TrEMBL:Q18096"
/db_xref="WormBase:WBGene00007687"
intron_pos 55:2 (1/11)
intron_pos 95:1 (2/11)
intron_pos 128:1 (3/11)
intron_pos 186:1 (4/11)
intron_pos 233:1 (5/11)
intron_pos 315:0 (6/11)
intron_pos 517:1 (7/11)
intron_pos 571:2 (8/11)
intron_pos 608:1 (9/11)
intron_pos 643:2 (10/11)
intron_pos 856:1 (11/11)
BEGIN
1 MFLLIFLLAS YNSIASSSSI LVDFTSHAIQ PTPQAYIIEY SPPVGYPPSG SAVEGTTFYS
61 LINGTISATD YTVSISAILM DGTRQNIGEL TVFSSPDAPT LDSIETTEHE ATISYFPPQG
121 QNITYHMEYY PEEHKEYTNP IDTKTALVKL RGLDSGTTFR LRIRSVYQGV LSQEFIDTTF
181 TTQGTANYDY SSSAEQYSVK TLPPNFNIGL QTTTEMTSYE YSREVEEDPT ITTPLVAVTT
241 TFTPPVRETV MVSTTTAESS TTSTIPEVTE TEVSTTEVTL QKETTTPRRP TTTKPKASPM
301 EVNSGDLGED HPSENTNVLV DLPEMIKEYG EPSEIWLSDE NEMLRLDWEA PENANCEAFF
361 VNYTILTLSR PRSFSLATSD ENANIKMFPE HTLDIRVFCM IAGALSKTWW GHRIAHLSKP
421 KQLENVRVTE VNTDEFYVAS IKLAWDWPVY HDFKSYKIVI SFGIGRAESK EMEVTNKEEF
481 VLLDKLDPSN SYSISIRNAS TELSLTSKTT QLEQVTAPII SSTVYPGQIS SNSININFGD
541 SDPEQGRFDY YLLTFSGNNK NISKKVEMEH EKSFTFTKLI PGKTYQFSVY TVYKGVRSRP
601 VTADITTYPL KVNQLFPVVG KDYVVLYWDI ENFADSDCRF RLSYNADNIP TVSVELKGAS
661 RHRFSALKAE VYYTFTITVI MGLGQAAAES ESEMITVAIP KGRLSPSIHR QGSRELVVGF
721 DNDLSVFSLL NGSPDNFAVI VSDDTDLNDD NYELKSWFEV KDEEVWGSYR ASPSTWNPFD
781 SERVRRAAFT VGTDDCVKRN LDEPYCNGIL RAGTDYRVKI RMYTDTKVAM ETDWGRIEGE
841 KDSEGDDDEE EEEDDGRRFP CHMYLNGCRR KSADRQFPMI SFILSIFIAL ILF
//