LOCUS CAA93494.2 733 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans PCI domain-containing protein protein. ACCESSION BX284606-3351 PROTEIN_ID CAA93494.2 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="pqn-39" /locus_tag="CELE_F48F7.4" /standard_name="F48F7.4" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00004126" /db_xref="EnsemblGenomes-Tr:F48F7.4" /db_xref="UniProtKB/TrEMBL:Q20576" /db_xref="WormBase:WBGene00004126" intron_pos 67:0 (1/7) intron_pos 123:0 (2/7) intron_pos 150:0 (3/7) intron_pos 225:0 (4/7) intron_pos 295:2 (5/7) intron_pos 439:0 (6/7) intron_pos 712:2 (7/7) BEGIN 1 MSAKQDLAPA PATVSHADTG LQPLPPQHQT HPPNYHQGPI IYQQSYAPVA HYQQGPQVWN 61 QPPQSTVHYV QYAPPIDASS YQENKVQSYN HYGTVHYAQP MDNGDMLMRP QQATYVPQQY 121 VTTPQWYPAG QQTQTQFIPS YATTFNVAND PTYHPNHPMN RGGAGRRDDY HVANQSSSVG 181 YMQFVPFVAP IGVMETQAHA SASYTANWVS STSSIPPEMK DEPESDNISQ YDGQRPTSQL 241 NGENWTDAED HLSPTTVQNH PFNVVEPRPQ QNFVEKEKSG SQSTTRMSKN SKGDRNEGKR 301 ELTFDERLHK ARMQKSRVEN EGVNGATSPT ATTVAAPSSN VANSSTSALT PRSNGQKKET 361 SGSVRNEGSN NNSQNRNTKY RGAVGNNQHM YNGNEGHSGA HEQPQQQQQQ RYVNYGNATG 421 ERERQPRRDN NYSKNRYENN YHNNSSNNQR SPYQAQNQQN QPTQQNQHPP REGAPENYRQ 481 QSYRGNRGGR GAYRGGGYHQ PHQQNLQNPL PQQQPLNQYP PAPQIMGPQM VATMNAFQNA 541 NIGTLPPGVQ RIPLLPGPFG MPRQVHQDIK FQNTWLDATS CPLPLAAVMS IDTRFGRGGM 601 RGRGRGVNYT YRGAYRGGYT GGYAAPPRYI GRPVETPATP KESEQSSSTE VDDMAKKDDE 661 ESVQDTASAT ESTVETPADQ GKTQEQNKDS DSQNGKQEPV AEKANEEIIE ILPANTKVQS 721 PDAAAEKEKV EST //