LOCUS CAA93475.1 1087 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Bromo domain-containing protein protein. ACCESSION BX284606-2502 PROTEIN_ID CAA93475.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="bet-2" /locus_tag="CELE_F57C7.1" /standard_name="F57C7.1b" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00010199" /db_xref="EnsemblGenomes-Tr:F57C7.1b.1" /db_xref="EnsemblGenomes-Tr:F57C7.1b.2" /db_xref="InterPro:IPR001487" /db_xref="InterPro:IPR018359" /db_xref="InterPro:IPR036427" /db_xref="UniProtKB/TrEMBL:Q20948" /db_xref="WormBase:WBGene00010199" intron_pos 263:0 (1/6) intron_pos 352:0 (2/6) intron_pos 392:0 (3/6) intron_pos 628:0 (4/6) intron_pos 795:2 (5/6) intron_pos 957:1 (6/6) BEGIN 1 MSDYSAKPSG SLARIGDYDL SSDDSDQNDE DETLIASKTI QTGAVQVNDI AVAEASPAET 61 DAKSSASPVS GPEPPTSAVV ENRDLDEFKK ESGSNDDKQE EINEDKDSNE ETVFQQTESG 121 SADVVDKTDV KQKDSDSSAD DDHSHSKSGS VHSPQKPQGS TTPCSVQSPA SPVGDEQAVK 181 MEEVEEPIVA SEEVPDKKPE SVKESTDSES SGSEHGFEKM DTAEKVEDEC NDDEVAASNG 241 TEEPEPGDKA ADTVNPWETP RQEPVDGVVQ PRTEPPAGKP TRHTNCLDFV LFTVVKDALK 301 HKHSWPFQLP VDAIKLEIPE YHNIVNTPMD LRTIEKRLRN LYYWCAEDAI KDLNTLFDNC 361 KKFNDRNDDI YIMCENIEGV VQRGLEWMPS EEKPADLADH HRRGMFSAST PSGKTKGPKQ 421 RGRKSTRGRK KTSLPRGAST FKDESVDDNN DDESSKVDSI NFDDDDDTAT EKDAESRAES 481 VQPEVVNEEP KPSTSQPPSK KRKAENGEPA VAVKIATPAT PVAAHPQEET PRRKNPNTLI 541 EWKHLVPRWQ GKIPEWQKFC SKLLNEIHSV KNKGFAQVFY LPVDPIKLKI YDYLEVITNP 601 MDLQTIKKKL DFKQYAEPEE FVHDINLMVD NCCKYNPKGS PAHSNALELR SFFEQRWKLF 661 PRPGVDPIIA DSYINQNLVV NTDLIEDERI NSYLSAVKAE EKKCAEKLEQ LRSMSEGLYT 721 IAMQRREAKL AGNTAPALAQ NQLSQLEGLG ISIKSTPMMI PELISPALSV RSSSRAPVPK 781 IIDDIGPSPI KARKISKPRA SMASNVSVPY TPTGNPRGRK PKKSGRPKKN IYSPATVSER 841 ISQQPPFEVT PYVSIYGRKV VGTNDKIELS ERMASIPQMY ITPILRIIQI GHHNTGKTIT 901 SLRSLCEEEI DFNDVSDDLV IELLDYLEMI QKDKAKAEQV RQELEVKAKF YGFEAYDNKL 961 GTIPKTRNMP PPLQHRMRSD SPSPSASRTG NQSSDSDSAS DDSSDDEPSR SNSNVAGPRR 1021 ALELSGNSSS ASTPAGPSKA QPAVVRPSSK SVASKPAYTK RTLSESSSSS DSNGSSSDSS 1081 DSDSEPS //