LOCUS CAA92192.1 457 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Nuclear hormone receptor family member odr-7 protein. ACCESSION BX284606-3008 PROTEIN_ID CAA92192.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="odr-7" /locus_tag="CELE_T18D3.2" /standard_name="T18D3.2" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Tr:T18D3.2" /db_xref="WormBase:WBGene00003854" intron_pos 112:1 (1/5) intron_pos 271:2 (2/5) intron_pos 301:0 (3/5) intron_pos 356:2 (4/5) intron_pos 404:1 (5/5) BEGIN 1 MIVPDTEGLL IYSYGLMYGS YCMACQMLIP HFQCIPGIFP NFRISTELIK TMTDKLEQPN 61 NNVPQQPWGP FPPAFGGRPS GEQTDGNPGE FDNDAAHQQT APFMTHFFPR IGLQFPDFTE 121 YQRFNGFQRN AFFPNPFGSQ FTGQAFAQSF PLHNSMTTMD GFNLTHAPHP FSTNTNSTKP 181 KDIENTVQST IKHSSENIQD KPPVLSVEYP VKYDSELKFD ANVDFTAVPK QESSDDSTLK 241 NLKKSDQQLQ QPQQFTFPPP LLAEKSFEQP RMREDVLPFH PQFYPAPLDM GTNFKQEMRT 301 PPIDGHIDYR KFDASGKRME FQPPGALHDC QVCLSTHANG LHFGARTCAA CAAFFRRTIS 361 DDKRYVCKRN QRCNNASRDG TGYRKICRSC RMKRCLEIGM LPENVQHKRN RRDSGSPPRK 421 TPFDTFFNGF YPSFQPSGSA AQPITVSSSE SPRHTTN //