LOCUS CAA92129.3 602 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Choline/carnitine acyltransferase domain-containing protein protein. ACCESSION BX284606-2430 PROTEIN_ID CAA92129.3 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="F41E7.6" /locus_tag="CELE_F41E7.6" /standard_name="F41E7.6" /note="Partially confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00009622" /db_xref="EnsemblGenomes-Tr:F41E7.6" /db_xref="GOA:Q20278" /db_xref="InterPro:IPR000542" /db_xref="InterPro:IPR039551" /db_xref="InterPro:IPR042231" /db_xref="InterPro:IPR042232" /db_xref="UniProtKB/TrEMBL:Q20278" /db_xref="WormBase:WBGene00009622" intron_pos 31:1 (1/14) intron_pos 74:0 (2/14) intron_pos 128:2 (3/14) intron_pos 170:1 (4/14) intron_pos 238:0 (5/14) intron_pos 276:0 (6/14) intron_pos 310:0 (7/14) intron_pos 339:0 (8/14) intron_pos 378:0 (9/14) intron_pos 421:2 (10/14) intron_pos 462:0 (11/14) intron_pos 497:2 (12/14) intron_pos 534:2 (13/14) intron_pos 565:2 (14/14) BEGIN 1 MTSSTFSEQN SLPSLPLPEL EETIGKYLKS LVPIVPKDEL ETITTLANDF ASSQNGQILQ 61 RFLKEKTISS KNWLEDWWYD AYLTNRDSLL TQNMGAVVPK FSVNDSSQIE SASHIIHHLM 121 SYWSLIRQEK IEVTKSRGNS WDMNQDYNLF NACRVPALPK DRIKRYFRTE AEGKCPSHVI 181 ILCNGHVWKL ETTCENSKFL NIFEIQNALK RIKESSRTSV ECSIVQLTSL GRDNWAQIRE 241 SMIQNSNRNV ELFHDVDSAV FCLTLSDDFV ENESELMKYS IFGSPLNAYC DKNLNIIVLR 301 DGKTCLQAEH GNVDAISLFA PCDFAADQFQ LNRKLSKKSS QNKSSSMQPV MPVKIEFLLT 361 GSVSQKISEA ERDFYFLSSK TNVNVYHYTN FGATYCKQRT LYADTIIQIA LQMAYLKTHN 421 KLAPTYETAS TRMFYHGRTE TVRSLTTDME KYLTACENSA TNETLKLLFF DAYNSHNTLM 481 DAAREGKGID RHFYGLRKAQ TAIQSYGKSV EIPFLDHKSF SASGGNGNFL LSTSFLGYHE 541 NGCFGYVVPM CKDGYGTFYR INKTSFTFTI SNWLDDATNG DEFRENLEYS LNFIKNVILT 601 NE //