LOCUS CAA92115.1 1119 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Ion_trans_2 domain-containing protein
protein.
ACCESSION BX284606-2725
PROTEIN_ID CAA92115.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="slo-2"
/locus_tag="CELE_F08B12.3"
/standard_name="F08B12.3a"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00004831"
/db_xref="EnsemblGenomes-Tr:F08B12.3a"
/db_xref="GOA:G5ECD1"
/db_xref="InterPro:IPR003929"
/db_xref="InterPro:IPR013099"
/db_xref="UniProtKB/TrEMBL:G5ECD1"
/db_xref="WormBase:WBGene00004831"
intron_pos 38:2 (1/18)
intron_pos 64:1 (2/18)
intron_pos 112:2 (3/18)
intron_pos 149:0 (4/18)
intron_pos 174:0 (5/18)
intron_pos 202:0 (6/18)
intron_pos 349:0 (7/18)
intron_pos 392:2 (8/18)
intron_pos 452:1 (9/18)
intron_pos 488:2 (10/18)
intron_pos 538:2 (11/18)
intron_pos 805:2 (12/18)
intron_pos 920:0 (13/18)
intron_pos 948:0 (14/18)
intron_pos 989:0 (15/18)
intron_pos 1030:1 (16/18)
intron_pos 1042:1 (17/18)
intron_pos 1071:2 (18/18)
BEGIN
1 MSDDTNNRTD RCTMKHRERR VDSCHSLPSD YRIPNKHVAR MQYGEKKNIK HKLQQWFIEN
61 PSISARIRSC NVLIKLLTCI LYCIRVVNDE RSYPDDFPFS EEEAGKQDVT LYKYLLWVDF
121 DFKIWFLQTM FACISMVYTI LVFYLSYSGS VVRLLINIHF LLELITSFPF IISIFIPSLT
181 YLYVPVFLNC WLAKGALQAM MNDLNRKSFI SSSALFRQLL LLFSVLACLI FTGMCSIEHL
241 QRARGKRIDL FTSFYFVMVT FSTVGYGDWY PDYWASQLCV VILICVALGL IPKQLDELGQ
301 TWSERQKSGT DFSSWNGVES HVVVTITTLE VEFIRDFLEE FYAHPENQRI QIVLLSPAEL
361 DNQTRMLLKI PLWNNRVHYV RGSSLRDEDL ERANVATSKA CFILSARHVN RKVATDEHTI
421 LRSWAIKDFA PNVKQYVQIF RAETKMHIEH AEVLICEDEF KYALLANNCI CPGISTFITL
481 LMHTSRGEEG QKSTEPWHKV YGFHSGNEMY QIKVQDSKFF CEYVGKSFSS TSFHAHKEYG
541 IGLIAVSPDG DTSRMKLNPG SSHIIQPTDT VYYMGLTNEE SLTDFRKGIR SQQKRANVAS
601 TIANIGTVAV DVPRSDKTEL VGRKKKKRKE KAADEIHLIE VGEHVQSSRR PSIAMVTEGK
661 IDSSSDSDQE EICDKCRGPC IQHKLQRTYP QVRTYIGTSN TVCHMMKERR SLCCLKLDEK
721 CAHKSATSAH EYQWRNRPII LAADRTSSGM YNLVIPLRAY YRPVHDLHPI IILLELEEQD
781 SLNDAFLDAI SYFPDVYWMK GKVGNLDCLL RAGVSSAEHV VVVKETAVMA EEHTADCNTI
841 ITVQKIHRMF PRLRMITELT HATNMRFVQF NPHNAYSLAQ SRFEKKERKR GSHMPFMFRL
901 PFAQGGVFSA NMLDRLLYQA IIKPFVVDLV RLLLGIDQHS DGGYLTSFVI TSDDLWIRNY
961 GRLYQKLCSS VADIPIGIFR TKKMDTKTVS LDLQEQCKDF ENTEMGRNKD MYDHVKNRMR
1021 LLNIKDTHTF NWKYASRCRS TVLEGSDEKS QISYVIINPA QDLELESGDI VYVIRSPIRK
1081 DATNARINPR RGLRRSKNVS ETIDSTNQVP TIVIDENNL
//