LOCUS CAA92026.2 588 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans ADP-ribosylation factor-binding protein GGA1 protein. ACCESSION BX284606-2634 PROTEIN_ID CAA92026.2 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="apt-9" /locus_tag="CELE_W04G3.4" /standard_name="W04G3.4" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00000166" /db_xref="EnsemblGenomes-Tr:W04G3.4" /db_xref="GOA:Q23165" /db_xref="InterPro:IPR002014" /db_xref="InterPro:IPR004152" /db_xref="InterPro:IPR008942" /db_xref="InterPro:IPR041198" /db_xref="UniProtKB/TrEMBL:Q23165" /db_xref="WormBase:WBGene00000166" intron_pos 14:1 (1/12) intron_pos 41:0 (2/12) intron_pos 69:0 (3/12) intron_pos 161:1 (4/12) intron_pos 204:0 (5/12) intron_pos 255:0 (6/12) intron_pos 316:1 (7/12) intron_pos 346:0 (8/12) intron_pos 364:0 (9/12) intron_pos 403:2 (10/12) intron_pos 458:1 (11/12) intron_pos 515:0 (12/12) BEGIN 1 MEEEPVRPID YWVCRATDRF IGDEERIKAL DFIIESIYKQ PASALLAVDL FSHKLSSPSQ 61 EEAMLTIRAL DYLVRNGGEK VHERCGRYKF LNELVRLIAP KYNGKLTSDA LKTEIIKLLF 121 IWQLSIKHIP KYKQVYESLK LSKIITDDPH VRETEVPVFA VPPVRSSVFD NEEQAVLLKA 181 LLSSNRPEDL ETANNLIKTL VETEEHKLVK IHERRKKLDH AINLCNQVEH LRLDKAAETI 241 GLGNYSPDNE LTLQRVTNEL IQLQELFYGY VNELAENNDP CLEEVLNIND QINRVLPENE 301 TPKCGNRAPI SARTQLDPEN QELLVFNTPT SEVPPKNGFC DPRDLEGSLL NNMIESEFVE 361 EPKIVPVQQM TPVLNRNSSA SPRASGDSSI FETDFLAGKR LPEPLKPPTL NELKPNTTTI 421 TLEALEVLVP PMSPEPTSLS PKAIPEKVAL NPSSIIMRNR VPIEVLYSKG MRILLYYCQS 481 DMTVSNIHSY VLVIQNHNNF TIKDVNLSLK TNDKNVIIRL QDSVNNLAGF NIFGQQETIN 541 LLLCIQQLND VKDVELDFTL AYKKSLESAI SGSFTLPIIP EHIFNINF //