LOCUS CAA91999.1 1328 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Peroxidasin homolog pxn-2 protein.
ACCESSION BX284606-2606
PROTEIN_ID CAA91999.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="pxn-2"
/locus_tag="CELE_K09C8.5"
/standard_name="K09C8.5"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00004257"
/db_xref="EnsemblGenomes-Tr:K09C8.5"
/db_xref="GOA:G5EG78"
/db_xref="InterPro:IPR000372"
/db_xref="InterPro:IPR001611"
/db_xref="InterPro:IPR003591"
/db_xref="InterPro:IPR003598"
/db_xref="InterPro:IPR003599"
/db_xref="InterPro:IPR007110"
/db_xref="InterPro:IPR010255"
/db_xref="InterPro:IPR013098"
/db_xref="InterPro:IPR013783"
/db_xref="InterPro:IPR019791"
/db_xref="InterPro:IPR032675"
/db_xref="InterPro:IPR034824"
/db_xref="InterPro:IPR034828"
/db_xref="InterPro:IPR036179"
/db_xref="InterPro:IPR037120"
/db_xref="UniProtKB/TrEMBL:G5EG78"
/db_xref="WormBase:WBGene00004257"
intron_pos 34:1 (1/20)
intron_pos 86:0 (2/20)
intron_pos 134:0 (3/20)
intron_pos 182:2 (4/20)
intron_pos 221:0 (5/20)
intron_pos 262:2 (6/20)
intron_pos 391:0 (7/20)
intron_pos 442:2 (8/20)
intron_pos 494:0 (9/20)
intron_pos 563:2 (10/20)
intron_pos 619:1 (11/20)
intron_pos 754:1 (12/20)
intron_pos 875:2 (13/20)
intron_pos 915:0 (14/20)
intron_pos 950:1 (15/20)
intron_pos 1035:0 (16/20)
intron_pos 1084:0 (17/20)
intron_pos 1143:1 (18/20)
intron_pos 1220:0 (19/20)
intron_pos 1313:0 (20/20)
BEGIN
1 MLLEFLLLIG ISLSTACPSE CRCAGLDVHC EGKNLTAIPG HIPIATTNLY FSNNLLNSLS
61 KSNFQALPNL QYLDLSNNSI RDIEETLLDS FPGLKYLDLS WNKIRYVPKL STAPNALVSL
121 NLVHNEISRL DNDLVSHSPY MQTFLIQRNR IQSLPHDFFN SRMVPTLKTV KMAGNPWSCD
181 CRMVNVKQFA DSLFAHSNQN IFIVGKCFFP KGLRNYVFRN LSIENLECEK PEYSKTDDGM
241 FKMSCPNNEM EGYHYDSIFL ENNKEARHTA HFARDKDGSL LSNGQFTRNY QCAFYRQKQS
301 IHMQKKMQAS SSTEPPITTT TMEPMTTSTM DSMDTTESVV TMTTMPEIDT KIVFEHKQLD
361 TTSRDGETLE LKCEASGEPT PTITWLFEKQ KLTESRKHKL TKNGSVLKIF PFLNTDIGQY
421 ECVASNGEES KSHIFSVSLK ESEQPVIIDA PMDTNATIGQ QVTLRCNAKG FPVPDVVWLF
481 EGIRIPRRNT RYTISDNNIE LTIEKVTRHD SGVFTCQAVN SVGSAVATAN LLVGAELTEK
541 VDKLLDDSTI EKIAKEAKQK VEKALSSTKD QQRMDKIESP NDLSKLFKFA INLKKVDLGK
601 AREIYEESIR LVQMHIDNGL AFESAMISPN VSYEAVLPVS YVQTLMEKSG CQTGQFAESC
661 EDHCFFSKYR SYDGQCNNHE HPWWGVSEMA FMRLLPPRYE NGFNTPVGWE KGKRYNGYEV
721 PNARKVSRVL IGTDETTPHS HLSAMTMQWG QFIDHDLTLT APALTRHSYK EGAFCNRTCE
781 NADPCFNIQL EADDPKLHTG LYQKHPCMEF ERNGAACGSG ETSPIFQRVT YRDQLNLLTS
841 YLDASGIYGN SEEQALELRD LYSDHGLLRF DIVSGANKPY MPFEKDSDMD CRRNFSRENP
901 IKCFLAGDVR ANEQLGLMSM HTIFLREHNR IASRLLEVNE NWDGETIFQE TRKLIGAMLQ
961 HITYNAWLPK ILGKATYNTI IGEYKGYNPD VNPTIANEFA TAALRFAHTL INTHLFRFDK
1021 DFKETKQGHL PLHNAFFAPE RLVSEGGVDP LLRGLFAAPI KMPRPDQVLN KELTEKLFNR
1081 FHEVALDLAA LNIQRGRDHG LPSWTEYRKF CNLTVPKTWS DMKNIVQNDT VISKLQSLYG
1141 VTENIDLWVG GVTEKRTADA LMGPTLACII ADQFKRLRDG DRFWYENEEM FSKAQLRQIK
1201 KVTLSKIICT NGDDIDRIQR DIFVYHGNST QFYEPCESLP EINLNMWTTC CDAMCSSSST
1261 LARNAIGGDE KAKRRKRRHH HSKKSCHDKG KRRKSGDRWN HSNDICVECM CHDGEVWCKT
1321 NNFCKSQV
//