LOCUS       CAA91975.2               694 aa    PRT              CON 06-FEB-2024
DEFINITION  Caenorhabditis elegans Degenerin del-1 protein.
ACCESSION   BX284606-3418
PROTEIN_ID  CAA91975.2
SOURCE      Caenorhabditis elegans
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
            Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
            Caenorhabditis.
REFERENCE   1  (bases 1 to 17718942)
  AUTHORS   WormBase.
  CONSRTM   WormBase Consortium
  JOURNAL   Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
            Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
            help@wormbase.org
REFERENCE   2  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  JOURNAL   Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
            Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
            Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE   3  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  CONSRTM   Caenorhabditis elegans Sequencing Consortium
  TITLE     Genome sequence of the nematode C. elegans: a platform for
            investigating biology
  JOURNAL   Science 282(5396), 2012-2018(1998).
COMMENT     Annotated features correspond to WormBase release WS292.
            Protein-coding gene structures below are the result of integration
            and manual review of the following types of data: ab initio
            predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
            alignments to published proteins and cDNAs; genome sequence
            conservation with other nematodes (e.g. to C. briggsae using WABA:
            Genome Res. 2000. 10:1115-1125); sequence features (such as
            trans-splice and polyA sites).
            Sources of data: large-scale EST projects of Yuji Kohara
            (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
            cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
            sequencing project (Genome Res. 2009. 19:2334-2342); IST library
            (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
            Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
            Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
            sequencing data (454 read clusters - Makedonka Mitreva,
            unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
            Numerous data sets from the modENCODE project (Science. 2010.
            330:1775-87); Individual C. elegans Nucleotide Database
            submissions; Personal communications with C. elegans researchers;
            Non-Coding gene structures below are derived using the following
            methods and data: ab initio prediction of tRNAs by tRNAscan-SE
            (Nucl. Acids. Res., 25, 955-964); integration and appraisal of
            miRNAs from miRBase (http://www.mirbase.org); integration and
            appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
            2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
            manual curation of novel published ncRNAs from the literature.
FEATURES             Qualifiers
     source          /organism="Caenorhabditis elegans"
                     /chromosome="X"
                     /strain="Bristol N2"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:6239"
     protein         /transl_table=1
                     /gene="del-1"
                     /locus_tag="CELE_E02H4.1"
                     /standard_name="E02H4.1a"
                     /note="Confirmed by transcript evidence"
                     /db_xref="EnsemblGenomes-Gn:WBGene00000952"
                     /db_xref="EnsemblGenomes-Tr:E02H4.1"
                     /db_xref="WormBase:WBGene00000952"
     intron_pos      49:0 (1/15)
     intron_pos      88:0 (2/15)
     intron_pos      133:0 (3/15)
     intron_pos      166:0 (4/15)
     intron_pos      196:1 (5/15)
     intron_pos      221:1 (6/15)
     intron_pos      251:2 (7/15)
     intron_pos      285:0 (8/15)
     intron_pos      344:2 (9/15)
     intron_pos      385:2 (10/15)
     intron_pos      416:1 (11/15)
     intron_pos      503:0 (12/15)
     intron_pos      542:1 (13/15)
     intron_pos      602:2 (14/15)
     intron_pos      644:1 (15/15)
BEGIN
        1 MPFGVTMGNR KNLVHRILTP RLLRRNEERY RETEALVKKF KKKEEKEKDV GKSFEDDSPC
       61 KEEAPKTQIQ HSVRDFCEQT TFHGVNMIFT TSLYWVRFLW VVVSLVCICL CMYSFSHVKD
      121 KYDRKEKIVN VELVFESAPF PAITVCNLNP FKNHLARSVP EISETLDAFH QAVVYSNDAT
      181 MDELSGRGRR SLNDGPSFKY LQYEPVYSDC SCVPGRQECI AQTSAPRTLE NACICNYDRH
      241 DGSAWPCYSA QTWEKSICPE CNDIGFCNVP NTTGSGNIPC YCQLEMGYCV FQPESRVRRI
      301 WEFQGNKIPE KGSPLRKEYM EQLTQLGYGN MTDQVAITTQ AKEKMILKMS GLHPQRRAAL
      361 GYGKSELIKM CSFNGQQCNI DTEFKLHIDP SFGNCYTFNA NPEKKLASSR AGPSYGLRLM
      421 MFVNSSDYLP TTEATGVRIA IHGKEECPFP DTFGYSAPTG VISSFGISLR NINRLPQPYG
      481 NCLQKDNPQS RSIYKGYKYE PEGCFRSCYQ YRIIAKCGCA DPRYPKPWKR SAWCDSTNTT
      541 TLNCLTTEGA KLSTKENQKH CKCIQPCQQD QYTTTYSAAK WPSGSIQTSC DNHSKDCNSY
      601 LREHAAMIEI YYEQMSYEIL RESESYSWFN LMADMGGQAG LFLGASIMSV IEFLFFAVRT
      661 LGIACKPRRW RQKTELLRAE ELNDAEKGVS TNNN
//