LOCUS CAA91810.1 1787 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Chromodomain-helicase-DNA-binding
protein 3 homolog protein.
ACCESSION BX284606-3081
PROTEIN_ID CAA91810.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="chd-3"
/locus_tag="CELE_T14G8.1"
/standard_name="T14G8.1"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00000482"
/db_xref="EnsemblGenomes-Tr:T14G8.1"
/db_xref="WormBase:WBGene00000482"
intron_pos 113:0 (1/7)
intron_pos 454:0 (2/7)
intron_pos 598:0 (3/7)
intron_pos 815:2 (4/7)
intron_pos 1259:0 (5/7)
intron_pos 1682:2 (6/7)
intron_pos 1764:1 (7/7)
BEGIN
1 MSDDQHESID GDETMEEDSM LAEGHEDGEE DVGEDEEEVE TEESQGVPTT SEKKKPPPKK
61 KKGGKKSSKK KNNCDYPDPY KSTSAEISAA IGLTDVDVDY EQEEFQSITN LKNFSSLVKP
121 YILKVNPGTN VTKMYPLFQV KYKEFQDHMT AHGKSIQKQQ RAKFVPVPVP VTPQEKIIPQ
181 KTRSSARRKR RDGSDGEGGG HDSDQEFEAL IKQHEKQQDE AEKGKEEARI NRAAAKVDKR
241 KAALESARAS KRARKEQGVV EENHQENCEV CNQDGELMLC DTCTRAYHVA CIDENMEQPP
301 EGDWSCPHCE EHGPDVLIVE EEPAKANMDY CRICKETSNI LLCDTCPSSY HAYCIDPPLT
361 EIPEGEWSCP RCIIPEPAQR IEKILSWRWK EISYPEPLEC KEGEEASKDD VFLKPPRKME
421 PRREREFFVK WKYLAYWQCE WLSETLMDVY FTALVRMYWR KVDSENPPIF EESTLSRHHS
481 DHDPYKLRER FYQYGVKPEW MQIHRIINHL SYAKSQQDYL VKWKELSYEH ATWERDDTDI
541 ANYEDAIIKY WHHRERMLND EVPRNVQKMI AKQREAKGLG PKEDEVTSRR KKREKIDILK
601 KYEVQPDFIS ETGGNLHPYQ LEGINWLRHC WSNGTDAILA DEMGLGKTVQ SLTFLYTLMK
661 EGHTKGPFLI AAPLSTIINW EREAELWCPD FYVVTYVGDR ESRMVIREHE FSFVDGAVRG
721 GPKVSKIKTL ENLKFHVLLT SYECINMDKA ILSSIDWAAL VVDEAHRLKN NQSTFFKNLR
781 EYNIQYRVLL TGTPLQNNLE ELFHLLNFLA PDRFNQLESF TAEFSEISKE DQIEKLHNLL
841 GPHMLRRLKA DVLTGMPSKQ ELIVRVELSA MQKKYYKNIL TRNFDALNVK NGGTQMSLIN
901 IIMELKKCCN HPYLFMKACL EAPKLKNGMY EGSALIKNAG KFVLLQKMLR KLKDGGHRVL
961 IFSQMTMMLD ILEDFCDVEG YKYERIDGSI TGQQRQDAID RYNAPGAKQF VFLLSTRAGG
1021 LGINLATADT VIIYDSDWNP HNDIQAFSRA HRLGQKHKVM IYRFVTKGSV EERITSVAKK
1081 KMLLTHLVVR AGLGAKDGKS MSKTELDDVL RWGTEELFKE EEAPVEGADG EGTSSKKPNE
1141 QEIVWDDAAV DFLLDRNKEE EGQDGEKKEH WTNEYLSSFK VATYNTKEAD DADDDEDETE
1201 VIKEGTEEQD PNYWEKLLKH HYEQDQETEL QKLGKGKRVR RQVNYASENM GQDWSAQNNQ
1261 QQEEDDGSEY GSDNGELLQT DEDYEERRRR REERSEKLPP LLAKVNGQIE VLGFNPRQRK
1321 AFYNAVMRWG MPPQDLTQSS WQVRDLRNKS EKVFKAYSSL FMRHLCEPVV DNSDSFMDGV
1381 PREGLNRQAV LSRIGLMSIL RKKVQEFEKF NGEWSMPETR EKMLATAAQA SVSNLPGMIK
1441 IKEEPIDIDE TPMDVDQSNI TKTEELASEV KVEEEPKAPR LPYKFNICDG GYTELHSLWI
1501 NEEKVARNGK EYEIWHRRHD FWLLAAVAVY GYGRYQINFQ DIMNDPKFSI VNEPFKQTGA
1561 DPATNFADVK NKFLARRFKL LEQSLVIEEQ LRRAAHINKQ QSPDQVGQLA QHFSELEHTA
1621 DAHVNIARES NNGNRNANAI LHKCLAQLDD LLSDLKTDVA RLPATISQVR PVTERLQMSE
1681 RQILSRLVVA KDPDAAPSKP ALPPSGPFIT PLFNQNFTTI QPKFPSLFDC NLSPDDEPID
1741 IEGSISAAVA EASRASSIAA TKDEPMDTSD KDIPSTSAAA GSSYPRY
//