LOCUS CAA91758.2 966 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Protein mes-1 protein.
ACCESSION BX284606-2856
PROTEIN_ID CAA91758.2
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="mes-1"
/locus_tag="CELE_F54F7.5"
/standard_name="F54F7.5"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00003219"
/db_xref="EnsemblGenomes-Tr:F54F7.5"
/db_xref="GOA:G5EBL2"
/db_xref="InterPro:IPR000719"
/db_xref="InterPro:IPR001245"
/db_xref="InterPro:IPR011009"
/db_xref="InterPro:IPR020635"
/db_xref="UniProtKB/Swiss-Prot:G5EBL2"
/db_xref="WormBase:WBGene00003219"
intron_pos 41:0 (1/11)
intron_pos 69:0 (2/11)
intron_pos 102:1 (3/11)
intron_pos 177:0 (4/11)
intron_pos 283:0 (5/11)
intron_pos 337:1 (6/11)
intron_pos 448:0 (7/11)
intron_pos 550:0 (8/11)
intron_pos 611:0 (9/11)
intron_pos 691:1 (10/11)
intron_pos 925:2 (11/11)
BEGIN
1 MKIHHFLTLL CTFLPLTTTA LTNSTPLSLL GPCYKRCVTK FGETKEQLTN AETISLEYDV
61 SNNTEFSLCK LGCNSHEYTD LNLAAFRYGQ LAYQKILTTV EDVPTRGTVL NDVFIVCLDT
121 SFMPSNNSAP SAKRLLSGTV LLVLDEDVAK ADNVFLIEVL ARNADKSAVQ VISQQWCYSS
181 NCNITFNAPT EVSSFDVRLR VSTFDSNGQV GGINFSKWHN INQILTKTFV DMSLKSVVWK
241 AEKAAANFVF NLTASDHVPA CSLQMIYRSS LSSELLHRNF YLDHTLEVFV NNLDFDKIYT
301 MQLAPSGTHD RSTPSLASAV IEIPPCRHLV DDYSMCAPPP VSSLSYNWNL SPTSEYELLI
361 KWKLLNYMDG LNVTEELSIP VAYFLLNAHP LITANNEQCE KYEKIRRVVS YGLRELVFHV
421 PDTDCNYEVE MTAVDTNQRI SEVKKIQVFR FNVPPYVSFL QASDIPTSVE LMAVVLATSA
481 IFALIALFLL YRKRKRDKKA RFQMYKDAEA GVSYDYVATT ESLGSVVQIR STNFRFEPVE
541 NIDGNIEAAL AQQQKFEGGT MNSMFRTYYN LDHPVKVPAH MAEASSDEDN GYENIRYSYF
601 GSELSDDVFE EDIYMTHKSL SIYCQDSPLT TPMAPIAPYE HFDDIPSHQY RNFQVHNFNE
661 RIEKQAYWLM ATVVDVVRRE LYSLKVPKDY TPETISAMRK ELEFLRTLAP HGNCRRFEGV
721 VIGRWDDLPR QVIGILIENT RGGTLRNYIA AVGSVFRNCS LATDHDSFAS QQDMNSTQHP
781 FDKLSTEADE NNSKKVKIQE ITDSLSIRFC QFAEQVSSAL EHLHSAGSVH TRVTTLNIYL
841 LHNYSDPFDM LPDQVVKLGN FGFAVQNSED VVLDDNLQPP EVIKGEKYEA RGDIWQFGLC
901 LAEMCSLGDL EQSEVGTLKS GHDTFKNLPS TQVLRDAAKR CLSARTRPSA SDLCGVFKSV
961 NVAATV
//