LOCUS       CAA91541.2               401 aa    PRT              CON 06-FEB-2024
DEFINITION  Caenorhabditis elegans Neurotransmitter-gated ion-channel
            ligand-binding domain-containing protein protein.
ACCESSION   BX284606-2926
PROTEIN_ID  CAA91541.2
SOURCE      Caenorhabditis elegans
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
            Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
            Caenorhabditis.
REFERENCE   1  (bases 1 to 17718942)
  AUTHORS   WormBase.
  CONSRTM   WormBase Consortium
  JOURNAL   Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
            Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
            help@wormbase.org
REFERENCE   2  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  JOURNAL   Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
            Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
            Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE   3  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  CONSRTM   Caenorhabditis elegans Sequencing Consortium
  TITLE     Genome sequence of the nematode C. elegans: a platform for
            investigating biology
  JOURNAL   Science 282(5396), 2012-2018(1998).
COMMENT     Annotated features correspond to WormBase release WS292.
            Protein-coding gene structures below are the result of integration
            and manual review of the following types of data: ab initio
            predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
            alignments to published proteins and cDNAs; genome sequence
            conservation with other nematodes (e.g. to C. briggsae using WABA:
            Genome Res. 2000. 10:1115-1125); sequence features (such as
            trans-splice and polyA sites).
            Sources of data: large-scale EST projects of Yuji Kohara
            (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
            cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
            sequencing project (Genome Res. 2009. 19:2334-2342); IST library
            (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
            Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
            Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
            sequencing data (454 read clusters - Makedonka Mitreva,
            unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
            Numerous data sets from the modENCODE project (Science. 2010.
            330:1775-87); Individual C. elegans Nucleotide Database
            submissions; Personal communications with C. elegans researchers;
            Non-Coding gene structures below are derived using the following
            methods and data: ab initio prediction of tRNAs by tRNAscan-SE
            (Nucl. Acids. Res., 25, 955-964); integration and appraisal of
            miRNAs from miRBase (http://www.mirbase.org); integration and
            appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
            2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
            manual curation of novel published ncRNAs from the literature.
FEATURES             Qualifiers
     source          /organism="Caenorhabditis elegans"
                     /chromosome="X"
                     /strain="Bristol N2"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:6239"
     protein         /transl_table=1
                     /gene="lgc-17"
                     /locus_tag="CELE_T01H10.6"
                     /standard_name="T01H10.6"
                     /note="Partially confirmed by transcript evidence"
                     /db_xref="EnsemblGenomes-Gn:WBGene00011359"
                     /db_xref="EnsemblGenomes-Tr:T01H10.6"
                     /db_xref="GOA:Q22085"
                     /db_xref="InterPro:IPR006201"
                     /db_xref="InterPro:IPR006202"
                     /db_xref="InterPro:IPR018000"
                     /db_xref="InterPro:IPR036719"
                     /db_xref="InterPro:IPR036734"
                     /db_xref="UniProtKB/TrEMBL:Q22085"
                     /db_xref="WormBase:WBGene00011359"
     intron_pos      26:1 (1/8)
     intron_pos      58:1 (2/8)
     intron_pos      104:0 (3/8)
     intron_pos      140:2 (4/8)
     intron_pos      222:0 (5/8)
     intron_pos      250:0 (6/8)
     intron_pos      293:0 (7/8)
     intron_pos      363:2 (8/8)
BEGIN
        1 MFLGIIGTLF SICEIATFYY NPVLYVPDWI DYLNHQDNLT RDLFANYDPT ISSVYSSSFD
       61 YEPSHNHTRT VDRWNYTILL YYLKLVEVQE PEEKVSVVLE LVEQWYDPRL SWNSSLYSNI
      121 PTVFVRQEKV WSPTLSAFGV NEIIDFRDQD FRIVSIDDIG YIQDYLSVRV SSNCPMDVSR
      181 FPFDSQTCQI CFCLPIFNIR QVKILNEIYE GILQEKIIKT MGNSEWKVVS LTNRVEQLKY
      241 DDDYGNMDLA VFEITIRRNP LYYIYMIVFP SFVINGISIV GIFLKSADKM SKLNVGLTNI
      301 MTMTFILGVM ADKIPRTGSI PLLGIYIIIN LLIMIIAITV VVLITELRQW AVPRLKLKKS
      361 YISRKLETFL GSPIEYTCAI LLEFLTTANF FVIIGFWFED L
//