LOCUS CAA91540.3 399 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Neurotransmitter-gated ion-channel ligand-binding domain-containing protein protein. ACCESSION BX284606-2928 PROTEIN_ID CAA91540.3 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="lgc-18" /locus_tag="CELE_T01H10.7" /standard_name="T01H10.7" /note="Partially confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00011360" /db_xref="EnsemblGenomes-Tr:T01H10.7" /db_xref="GOA:Q22084" /db_xref="InterPro:IPR006201" /db_xref="InterPro:IPR006202" /db_xref="InterPro:IPR018000" /db_xref="InterPro:IPR036719" /db_xref="InterPro:IPR036734" /db_xref="UniProtKB/TrEMBL:Q22084" /db_xref="WormBase:WBGene00011360" intron_pos 24:1 (1/7) intron_pos 56:1 (2/7) intron_pos 102:0 (3/7) intron_pos 138:2 (4/7) intron_pos 220:0 (5/7) intron_pos 291:0 (6/7) intron_pos 361:2 (7/7) BEGIN 1 MRYVLIFAII EITTCFYQNE SLYVPEWNNF LENQVKLIKD VFTNYDNTLS PVYTKIDPTQ 61 PIGYNPLAPK RFNYTVSLYY LKLVEVIEPE EKVSVVLEMA EYWYDPRIAW DSSLYGDIKM 121 LHMRQDKVWS PTLSLFRIND IADFRDPDFR MVCVENTGHT YTTLSVKISL NCPLDVSMFP 181 YDSQTCRIQF NMPLFFMQQV EMFSQIYEGI LNSTVWEKMG NSEWELANLT HSVELLSYGD 241 GLGDMQLATF EIRIRRNPMY YIYMIIFPSF IINALSIIGV FLKKTDKMSK LNVGLTNIMT 301 MTFILGVMAD KIPKTGSIPL LGIYIIVNLF IMIVAVGLTI VLAEIQKCAI PKLRKNKSKM 361 NQKLEYVLGE PLETICMVIL EIFNTAIFMV MIGFWINDI //