LOCUS CAA91491.1 887 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Cytoplasmic aconitate hydratase protein.
ACCESSION BX284606-2705
PROTEIN_ID CAA91491.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="aco-1"
/locus_tag="CELE_ZK455.1"
/standard_name="ZK455.1"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00000040"
/db_xref="EnsemblGenomes-Tr:ZK455.1"
/db_xref="WormBase:WBGene00000040"
intron_pos 31:1 (1/7)
intron_pos 87:2 (2/7)
intron_pos 133:2 (3/7)
intron_pos 157:0 (4/7)
intron_pos 426:2 (5/7)
intron_pos 523:0 (6/7)
intron_pos 716:0 (7/7)
BEGIN
1 MAFNNLIRNL AIGDNVYKYF DLNGLNDARY NELPISIKYL LEAAVRHCDE FHVLKKDVET
61 ILDWKNSQRN QAEIPFKPAR VILQDFTGVP AVVDLAAMRD AVQNMGADPA KINPVCPVDL
121 VIDHSVQVDH YGNLEALAKN QSIEFERNRE RFNFLKWGSK AFDNLLIVPP GSGIVHQVNL
181 EYLARTVFVG KDGVLYPDSV VGTDSHTTMI DGSGVLGWGV GGIEAEAVML GQPISMVIPE
241 VIGYELVGTL SDTVTSTDLV LTITKNLRDL GVVGKFVEFF GTGVASLSIA DRATIANMCP
301 EYGATIGFFP VDSRTIDYLT QTGRDTDYTQ RVEQYLKSVG MFVNFTDDSY RPTYTTTLKL
361 DLGSVVPSVS GPKRPHDRVE LASLAQDFSK GLTDKISFKA FGLKPEDATK SVTITNHGRT
421 AELTHGSVVI AAITSCTNTS NPSVMLAAGL VAKKAVELGL NVQPYVKTSL SPGSGVVTKY
481 LEASGLLPYL EKIGFNIAGY GCMTCIGNSG PLDEPVTKAI EENNLVVAGV LSGNRNFEGR
541 IHPHVRANYL ASPPLAVLYS IIGNVNVDIN GVLAVTPDGK EIRLADIWPT RKEVAKFEEE
601 FVKPQFFREV YANIELGSTE WQQLECPAVK LYPWDDASTY IKKVPFFDGM TSELPSQSDI
661 VNAHVLLNLG DSVTTDHISP AGSISKTSPA ARFLAGRGVT PRDFNTYGAR RGNDEIMARG
721 TFANIRLVNK LASKVGPITL HVPSGEELDI FDAAQKYKDA GIPAIILAGK EYGCGSSRDW
781 AAKGPFLQGV KAVIAESFER IHRSNLIGMG IIPFQYQAGQ NADSLGLTGK EQFSIGVPDD
841 LKPGQLIDVN VSNGSVFQVI CRFDTEVELT YYRNGGILQY MIRKLIQ
//