LOCUS CAA91482.3 794 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans EF-hand domain-containing protein protein.
ACCESSION BX284606-2796
PROTEIN_ID CAA91482.3
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="noca-2"
/locus_tag="CELE_T04F8.6"
/standard_name="T04F8.6"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00011444"
/db_xref="EnsemblGenomes-Tr:T04F8.6"
/db_xref="GOA:Q22167"
/db_xref="InterPro:IPR011992"
/db_xref="UniProtKB/TrEMBL:Q22167"
/db_xref="WormBase:WBGene00011444"
intron_pos 21:0 (1/18)
intron_pos 69:0 (2/18)
intron_pos 110:2 (3/18)
intron_pos 166:0 (4/18)
intron_pos 190:2 (5/18)
intron_pos 217:0 (6/18)
intron_pos 265:2 (7/18)
intron_pos 312:2 (8/18)
intron_pos 343:0 (9/18)
intron_pos 427:0 (10/18)
intron_pos 459:0 (11/18)
intron_pos 514:1 (12/18)
intron_pos 532:2 (13/18)
intron_pos 563:0 (14/18)
intron_pos 589:0 (15/18)
intron_pos 633:2 (16/18)
intron_pos 698:0 (17/18)
intron_pos 753:2 (18/18)
BEGIN
1 MAQQDEGLSD ENVHVKELKR LFNSCNSDRN GLLDKDGLLI LCEKLNLSIF ANSIIDRVLC
61 NDHAINFNQF KDRFLLFLPE IIDLASGNQD ELLIAAYKSS SSLGIKDTQR LTRYDVHTIC
121 ESTSELDLLS LGDVNGIFDK CAISGKVSLN EFVMQYRSRQ KMTEEIHFIA DSYRISSINL
181 FETLDVNNSG EADHSAVIEY LTTSGLKLEE AISLLKDFGQ PTSQMISLVG LGNYLESTLS
241 HLLNNSQVSA RAAFFCMKSL LENYRCTVRE FEMRCEHMQK QIHIANQRRN MLIEELDQNQ
301 QSIEASYNNR LKEMEERCRG RIAAMEEKFR MERHEMQKEI ENIEKDLSLV RQNETSLKNK
361 LQLVERHNKR ITTELEDQTD AVNALEQENR ELRADLRKKQ QFRVSEDNAK IIAWKQKVEL
421 MVAHNKRLRE KLRDISKNSK CDLSPEAYIQ WTPPFRSQLL LIRKRRIQKG DTLSEMDSEP
481 ESIFYRRRRK RLRKKRDRMR RYENIHNIQS GSSRINEDGN LTVFSENSRK SLLSPRSRGM
541 LTSLNDNDQN LSSDRLLINR AKNTDRAKKS TTAFDELPHV NDYEIEIKML HSSIAAQKQM
601 YEGQILNLTR KLSQIQNAEE SSSRLYSLFE RYKINDTESK SPRSHGLEKN GSVNRVATSF
661 CARCVKVEPK INELNIIVGG SVKNMTVEDP VPTIMNHDHL HTEVGRLKAR LTSVRCKVAE
721 ITAVMALPLT SSRHHLMPST DFQSSKSQPF AMRNQRSFAD LRERTPLSEK SESSRDCVID
781 PSQFTPSSIF TKKL
//