LOCUS CAA91353.1 543 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Zinc finger protein egl-43 protein. ACCESSION BX284602-3594 PROTEIN_ID CAA91353.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279421) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 15279421) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 15279421) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="II" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="egl-43" /locus_tag="CELE_R53.3" /standard_name="R53.3a" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00001207" /db_xref="EnsemblGenomes-Tr:R53.3a" /db_xref="GOA:Q22024" /db_xref="InterPro:IPR013087" /db_xref="InterPro:IPR036236" /db_xref="UniProtKB/TrEMBL:Q22024" /db_xref="WormBase:WBGene00001207" intron_pos 41:0 (1/9) intron_pos 75:0 (2/9) intron_pos 118:2 (3/9) intron_pos 172:2 (4/9) intron_pos 211:0 (5/9) intron_pos 273:0 (6/9) intron_pos 305:2 (7/9) intron_pos 474:0 (8/9) intron_pos 498:0 (9/9) BEGIN 1 MSIDTDFLTS VEVKEDELHG NVLIAVTQIA LGRTIGVIDK ATPNDSNALL ILNLIKEADD 61 GEDANICMRQ EDRKTFLQTS KIINIGERLL LQRLSEEECD EEDQDDLENL ILLKDEDRPD 121 STQSCTKSSS EDSNLNGFEE YIREHGELVP GQTPPDGSHK CGVCPKSFSS ASGLKQHSHI 181 HCSLKPFRCH LCPKSYTQFS NLCRHRRVHS DGWTCPTCQS QMPSQAALTK HRPVCEMTAL 241 YKPLMAQLAG LSGAGGLGSV PYWPHILQMA TQAPHFPLAF LAANPEAYKL MQQTTCASPD 301 AECSSGHASE SSPTTTEPVD LTATPKPPST SEMETTSKSD DGEDRDSIGD SGNDDDDDSE 361 AGVLDESSTT TSTKKRPTSH TISDILAAPQ LGAQALNSTF LGMLQRSLNY NPAVPSPHSF 421 LRAMSGAKAS SSPSSSSGSG KDRYTCKFCQ KVFPRSANLT RHLRTHTGEQ PYKCQYCERS 481 FSISSNLQRH VRNIHNKPNT SLTPHNHHRQ RSLHNSTSTS TTTTTVHHPL LHLPGTSVPV 541 PKV //