LOCUS CAA91313.2 1169 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Protein qua-1 protein.
ACCESSION BX284602-2929
PROTEIN_ID CAA91313.2
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 15279421)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="II"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="qua-1"
/locus_tag="CELE_T05C12.10"
/standard_name="T05C12.10"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00004264"
/db_xref="EnsemblGenomes-Tr:T05C12.10"
/db_xref="GOA:G5EC21"
/db_xref="InterPro:IPR001657"
/db_xref="InterPro:IPR001767"
/db_xref="InterPro:IPR003586"
/db_xref="InterPro:IPR003587"
/db_xref="InterPro:IPR006141"
/db_xref="InterPro:IPR036844"
/db_xref="UniProtKB/Swiss-Prot:G5EC21"
/db_xref="WormBase:WBGene00004264"
intron_pos 32:0 (1/10)
intron_pos 87:2 (2/10)
intron_pos 142:0 (3/10)
intron_pos 180:2 (4/10)
intron_pos 204:0 (5/10)
intron_pos 267:1 (6/10)
intron_pos 794:2 (7/10)
intron_pos 834:2 (8/10)
intron_pos 1087:0 (9/10)
intron_pos 1143:1 (10/10)
BEGIN
1 MRRLSAILPI LLLSNFWPTV ESLNYKCHND QILVVQSFGN DTIRMHCQRL DLCGYQKLKC
61 DYDELQPQCG GKLNFVSHVN QKGSTAPVEH TCCNLFNPRS HHSIPTHIGN DCFIYELPDG
121 SSNGKKVDPA PADDAPYAVL KNPAEIPEQF DGVTGYRLRL FLLKNKSPPT LLVKGIERRL
181 DGYRVTICRP RCTSYDKVVN DNEGAEDGEW KAISWSSWSS SSWSTWARHA FNKAAAEGGE
241 AAERIRTRMP IGEKTVAGAA GATGAAGSDK SNINIHVESN GNNNNSFEGG RSSSEKSDGQ
301 LNREISGSSE AGAGGKGGAG ADGAAGSGAG AGAGAGTNGN INITVHTDGK SGGNAVAVAN
361 ANVTVNGAGG VSTTGTGAQT GNESGLGGSA GTDKAGGKKG GHGDSGDSGN NKNKDNGKGK
421 GKGKNDEEDE EDNGDEDGNG KGGNGGNPKG EWDDGDGDED DDGTDGGSKE SGNNGKGKGK
481 GSGDGDGNRN GNGDGNGRPK GDGNIKINIH SPDDNDLLEK DENGPNGKGG AGNGNGDGDK
541 DNNGKGNGTG DGDGDGNGNG NGLTGDGNGT GDGDNNESGN GNGDGSDKNS GAGAGTKPEN
601 REGGDGNGNG TGDGNGDGND NGNGSKGLGT GSGDGKGEGN KSGTPGKSDG KEDGAGSNGS
661 GNGKEGDGNK SGGSGKGGAG NGKSGDGSGD GKNNGNGGTG DGKDKNGKGS GSGDNDKSGT
721 RAAGKGNAEG NGKGNGNDGK GSGSGDGSGA GGKGDKSDSE SGNEADGKDG KKNEGAGGEA
781 AAGSGGANKG GSDGDDDDVD VTDVEVGTKP LTGTKLEELL AKLPNETADG NATGDGNEFG
841 TVQTGAKHNA ESSASGIPLV QARSNTVNGG APVPPAPGSG ATGSGTSGSG TSESVTNGSG
901 ATESGSTGSG TTGTGTSGTG SSGTGASAAR TSSIAGDAPQ AAVLADTPGA AGAAGGGRSN
961 CFSADSLVTT VTGQKRMDEL QIGDYVLVPS SGNVLKYEKV EMFYHREPKT RTNFVVLYTK
1021 SGRKLSLTGR HLLPVAECSQ VEQYTMNPDG IDVAMRESKY AEKARKGECV LSIDESGEVI
1081 ADEIVRVGRM TNVGIYSPMT VEGSLIVDGV LSSCFSHLES HSAHKLIFDF IYYVYNAFGL
1141 LNTNHVDLQP IPTFVSFAQY LSKTVLPFS
//