LOCUS CAA91299.3 779 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans TRansport of membrane to Cell Surface protein. ACCESSION BX284602-3141 PROTEIN_ID CAA91299.3 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279421) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 15279421) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 15279421) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="II" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="trcs-2" /locus_tag="CELE_T01B7.6" /standard_name="T01B7.6" /note="Product from WormBase gene class trcs" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00011312" /db_xref="EnsemblGenomes-Tr:T01B7.6" /db_xref="UniProtKB/TrEMBL:Q22047" /db_xref="WormBase:WBGene00011312" intron_pos 48:0 (1/4) intron_pos 260:0 (2/4) intron_pos 460:0 (3/4) intron_pos 688:2 (4/4) BEGIN 1 MSKILGDGHV RKTGRSCVIL EKQHNRLVDL PDSALRLNYE KKYYEPENGD HLIFSAQLQN 61 GRYSALTAIK PTDLLQVYGS LSYLDEQLKF GHVSIHGRTA KVFVPFSTRT TNGACWYGQG 121 AYIDKPYLIY IFRQEEAHGC KFVAWAIYDD TRKTTSVPPT PTDIQNTSHM KKLGPPTAVQ 181 RQSDHQSVEF VQAQSGVIYD ISDNYVISVT SPTCQNVEFA PTLYESWMRP GRFITFDGRR 241 VSDVKTSKLM GSNPEDMGSI YPIRKLTPLT ITISAIMNKV SHGKAGWAWN DHVGRIYIPW 301 NSTDRYMQAS KPLPFTPVHL EIAYNGKHDD IPWVACGSSL VEEQEYDQIV DENSRMLKTE 361 DNWKIQSVVD GPENPSIFLA KFDEKGLKRT AFAKVIDLNS GNIPPTGTLV RITYYAQERH 421 GRHAMRCVLV TTMEKVERFP KVHSIINGSG EKHFPMMYEQ PIPKKQVIPP TPVQRVQAAP 481 PPAKNCWNLK NLGSPAAQPS VQDFPTVTGD EDDNIFVEET NTALPPPGFV PPGLVAPPGL 541 PPPPGLPAVP LSTDLAYDFK MTSSIPMTNG LGHLRLGSVW SGTPVEAKQE EPLHYFQQQD 601 NFLGSSFGPI SSTFSADNFF TELTASISQP STSSVVNSGP ISDLRNTQSE ASSPGLKSDG 661 NEPVEETNCW SSLEAATNGN NPFNSSFSYG FPHMDLPIYQ KMMPNANDIL KPMPLVEEEL 721 KPATSATHSE ADSCTCGTEQ LIWDLWQNPH FIAAFAASDP ETFKRVDAKR KLFSLSNHR //