LOCUS CAA91144.2 1220 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans K Homology domain-containing protein protein. ACCESSION BX284602-3565 PROTEIN_ID CAA91144.2 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279421) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 15279421) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 15279421) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="II" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="vgln-1" /locus_tag="CELE_C08H9.2" /standard_name="C08H9.2" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00007463" /db_xref="EnsemblGenomes-Tr:C08H9.2a" /db_xref="GOA:Q17832" /db_xref="InterPro:IPR004087" /db_xref="InterPro:IPR004088" /db_xref="InterPro:IPR036612" /db_xref="UniProtKB/TrEMBL:Q17832" /db_xref="WormBase:WBGene00007463" intron_pos 7:1 (1/5) intron_pos 97:1 (2/5) intron_pos 561:0 (3/5) intron_pos 950:0 (4/5) intron_pos 1156:0 (5/5) BEGIN 1 MDNGHIEETN NVEIDPATGG AVMSFSYASD FPTLPDAAPA SAPTAKQTHV WSRPTLSKSE 61 VNITFRLASD ERSNKVKSFG STSEESKKAQ AIATATKTRI ELSESKDGEL TVVVKGERAK 121 AEEARARIIR DLQTQASREI DIPKDHHGRL IGKEGALLRN LEAETNCRIQ IPNRDGPSSK 181 ITITGPREGI QRAAAHILAV SEREAKLATE HIVCPKNLVA FVRGPKNETY DRLTQNNGVK 241 INIPPPHVTN EVISVTGEKD GVLRVAAEIR QIIESKKNVS SIQVAVARTQ HRYIVGQSRS 301 GIHDVLQKTG CVVEVPAEDS GSDQVTLIGN AQDLAKALAL VIERASSVVT QSISAPNWLH 361 KHLIGPKGAT LTALVPNRNN VQIEFDNSNQ IFLEGSPEEV KLAFEPLSKE VARLQMELAI 421 EKVKVHPTLH RHVIGRGGSL ISKIKDQHGV QITIPNEETN SDEIVVEGKK EGVKKAVTEI 481 RAIVTKIENE KSRDIIIPQR LHKLIIGSKG SGVQVIRDSH PNVSVVFPDA KSKSDVVNIR 541 GDKTEVDAVY KKLTALSKEY AENNYQQTVA IFKEFLKHIV GKGGASIRKL RDETETRIDL 601 PESGSDDGKI TVTGKQANVE KAVAQLNKIQ EELANVAEES IEIPQKVQSR FFGNGRRLIS 661 DIEDECGGVH IRFPSEKSES TKVTIRGPAG DVAKAVGLLS ALAKDKEENY VEDTVKAKPE 721 FHRFLIGKGG SKIAKLRDTL NVRVMFPKEG DAEKETIHLL GKKEDVPKAK AALEDAIKQL 781 SETVDIKITV DPKYYKNFLA RGAALVKEIQ EQNGGVVISF PKNGTDSSEV SIRGSKQCVE 841 AAKNRIEDVV EDYEKQITDN VTIPAQFHRG LLAGRGAKIH ELQSKYNVSI RFPNNREEGS 901 EGSDQVTVSG RDTKVEEAKE ALLAMVPISK VIQLPVDMHR SIIGRGGETV RKLMQDYDVN 961 ISIPKDNSSE DITVTGQTEN VDQALEALRG KLGEYEAQAE DRKLKQWSMS INVPTDYHQK 1021 IIGQRGATIT ALKEKYGVII NVPREDGNET ITIQGYEEKA NECAAAIEEM ISELRSMFTQ 1081 EISLDARYHP RLIGQRGKNL KKVMEDYRVE IRLPRQGAED PNLVVVAGKD ENDVYDCIDH 1141 LRAEEEEFLL DNVERTQYMS PRQQESNNTR HHQQPTSVQM KGAPWQLDLG SSEQFPDMGP 1201 AAGSSAAVGG AGAWGSSRRW //