LOCUS CAA91091.1 1014 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Latrophilin-like protein 1 protein.
ACCESSION BX284602-3195
PROTEIN_ID CAA91091.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 15279421)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="II"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="lat-1"
/locus_tag="CELE_B0457.1"
/standard_name="B0457.1a"
/note="Confirmed by transcript evidence"
/db_xref="WormBase:WBGene00002251"
intron_pos 37:1 (1/7)
intron_pos 99:2 (2/7)
intron_pos 137:1 (3/7)
intron_pos 166:0 (4/7)
intron_pos 583:2 (5/7)
intron_pos 846:0 (6/7)
intron_pos 891:1 (7/7)
BEGIN
1 MRRNKTTYSL LQTILVACLL TVTPTFASNK PTTDESGTIS HTICDGEAAE LSCPAGKVIS
61 IVLGNYGRFS VAVCLPDNDI VPSNINCQNH KTKSILEKKC NGDSMCYFTV DKKTFTEDPC
121 PNTPKYLEVK YNCVVPATTT TTTTTTSTTT TDSSLIVDEE EEAQKDALNS DVIKPVKKKE
181 DVFCSATNRR GVNWQNTKSG TTSSAPCPEG SSGKQLWACT EEGQWLTEFP NSAGCESNWI
241 SSRNSVLSGV ISSEDVSGLP EFLRNLGSET RRPMVGGDLP KVLHLLEKTV NVIAEESWAY
301 QHLPLSNKGA VEVMNYMLRN QEIWGSWDVT KRKEFASRFI LAAEKAMVAS AKGMMTSAES
361 NVIVQPAITV EISHKIKMSS QPTDYILFPS AALWNGQNVD NVNIPRDAIL KINKDETQVF
421 FSSFDNLGAQ MTPSDVTVAI AGTDQTEVRK RRVVSRIVGA SLIENGKERR VENLTQPVRI
481 TFYHKESSVR HLSNPTCVWW NHHELKWKPS GCKLSYHNKT MTSCDCTHLT HFAVLMDVRG
541 HDLNEIDQTL LTLLTYVGCI ISIICLLLTF FAYLIFSRNG GDRVFIHENL CLSLAIAEIT
601 FLAGITRTED SLQCGIIAVA LMYMFLSALT WMLLEGYHIH RMLTEVFPSD PRRFTYLLVG
661 YIPPAIITLV AYLYNSDGFG TPDHCWLSTQ NNFIWFFAGP ACFIFCANSL VLVKTLCTVY
721 QHTSGGYLPC RHDVDSGRSI RNWVKGSLAL ASLLGVTWIF GLFWVEDSRS IVMAYVFTIS
781 NSLQGLFIFL FHVVFAEKMR KDVGHWMYRR GCGGSSNSSP NHKRHNVQRD LMSPGVNSST
841 GSDFLYNTND KYLTNSDTTN RLVYNGIMNH PNQMSVYQQH PHHQIYEQQP GTYDYATIAY
901 GDMMPGHRVA APPAYQRLAV AEGRYGSQHQ LYQGWHHRPP PEFSPPPPPL STGPPNSRHY
961 GTGSSGRRPP SSKMSDDSAY SDGSSSMLTT EVTPQGQTVL RIDLNKPSMY CQDL
//