LOCUS CAA91030.2 1804 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans VWFA domain-containing protein protein.
ACCESSION BX284606-3109
PROTEIN_ID CAA91030.2
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="vwa-8"
/locus_tag="CELE_F11C1.5"
/standard_name="F11C1.5a"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00008694"
/db_xref="EnsemblGenomes-Tr:F11C1.5a.1"
/db_xref="EnsemblGenomes-Tr:F11C1.5a.2"
/db_xref="EnsemblGenomes-Tr:F11C1.5a.3"
/db_xref="GOA:Q19346"
/db_xref="InterPro:IPR002035"
/db_xref="InterPro:IPR011704"
/db_xref="InterPro:IPR027417"
/db_xref="InterPro:IPR036465"
/db_xref="InterPro:IPR039891"
/db_xref="UniProtKB/TrEMBL:Q19346"
/db_xref="WormBase:WBGene00008694"
intron_pos 21:1 (1/27)
intron_pos 98:0 (2/27)
intron_pos 135:0 (3/27)
intron_pos 297:0 (4/27)
intron_pos 336:0 (5/27)
intron_pos 525:2 (6/27)
intron_pos 605:0 (7/27)
intron_pos 752:2 (8/27)
intron_pos 786:0 (9/27)
intron_pos 858:1 (10/27)
intron_pos 935:0 (11/27)
intron_pos 974:1 (12/27)
intron_pos 1092:0 (13/27)
intron_pos 1129:0 (14/27)
intron_pos 1158:1 (15/27)
intron_pos 1181:2 (16/27)
intron_pos 1224:0 (17/27)
intron_pos 1277:0 (18/27)
intron_pos 1337:1 (19/27)
intron_pos 1372:2 (20/27)
intron_pos 1454:2 (21/27)
intron_pos 1528:0 (22/27)
intron_pos 1562:0 (23/27)
intron_pos 1595:2 (24/27)
intron_pos 1657:0 (25/27)
intron_pos 1697:0 (26/27)
intron_pos 1737:2 (27/27)
BEGIN
1 MITRVSLLRL QHARKVLTTT ASTSSKPSTL TIGSVSVQLQ DAKNPDFVPA FYGQKNNPPQ
61 DLLPHLRWLI QKDKLKQDVF LLGVPGKIRL ELVLRYLEAT NREFEYLPIT RDTTEADIKQ
121 RREIRDGTAY YTDLCAVRAA LKGRVLVIDG VERAERNVLP ILNNLLENRE MQLDDGRFLM
181 KHDKYDELKV KYDEATLKKM GMERVSENFH VIALGLPVPR FPGNSLDPPF RSRFQCRNIQ
241 ELSFHTFLEQ AKLIAPNVSE TNLNDLISVV YAYNSEASTS RPRIGTAVVE NTLKIWNENP
301 SYSAGEIVNF SYPAKEVLSD SEKDLINTFK TKFELSTHER TRELKTDGAL HTVQVPADKR
361 KIQMKLPTPS HPTSFASTWI PTAKQENLIA DLALAFSKGD FILIGPKGSG KSRILGELSR
421 RLNFNYVTMV LHQDMNTREL IQRRHMKENG DTVWEDSILV TAARNGDVCV LDGVEMVHSS
481 VIMSLSQLIY HRRFDLPNGN RLVGEKEFLT IMERDGVDEA TMNERGVFQI PDSFRVLFVG
541 ESQSKEHKWI NENVLSILPF YTVPNLSLSE QMSIISEITH GSNTESVDKL IKFVQTIKNS
601 NDAGLKNTAT SLSLRRLIHI AKRDLMQPGH LRELVEKAAL SKFLPQITKE TFEHELNTAN
661 VFNDTTIRTK ENEKFLDMIR ANTIKAEDEA LIPNVLFHHN KQHDEILEDM ARDMKLGSHL
721 LLIGNQGVGK NKLTDRFLHL INRPRQYMQL HRDTTVQTLT MQTVVENGII RHEDSALVKA
781 ARSGQILVID EADKAPLHVI AILKSLLDTG TLVLGDGRTL RPASSFTEAD KTNDRIVPIH
841 PNFRIIMLAN RPGFPFLGNN LFAVLGDLFA IHMIDHPGRD SELAMIKKFG PTVPVKTLNQ
901 LLTIFNELRE KTDQGLLQYP YSTRELVNIV RHCNEFPTDP LPEVCRNVFD FDSYSEDTIA
961 TIHEVFQKHG VPLGVIRTGE SLSIMERIPL GEMKTIGKWS RQKVEFPKSY GFKTPVAVEI
1021 ERPEKMEFGL RKLDKQSNRN NVFSELHCVW KLPTDESNII SDGIRINDDL LVASVNPPRL
1081 YHCKDFMDTE SVDEINIHKI IPRFRAINKP RIRLAYLGGD NVLLHEEEAN FTAIISLPDK
1141 MAAVVTKQTS LGETLGAMFT GSNYSWRLSN QQSNHALLYE CGGREMLVYT DEKHGVTVQN
1201 GTVPFNIKRV FASAPQQWTV VSMENENYLL KVELGNFTLE KIDNDLEGGL DTVATKLDKN
1261 AMTLVAEPYY FVQGNHSGSV SGVLRKKSEN TFHKRPYSFT DDRIAANDVS RENAFLGSTL
1321 VRAVPGFMTP TECVEEKIRP FDCIGFLETI DTERKKICYV PVPHSGNISL YQDWVASITK
1381 SAFHIVPWDN DKVLTVDSSG SIRSFELRMS TLEKSFDDWK RMTGGADDEK LRMEFDRKPD
1441 DVDFNKLDEP KLGKIDPNNA PHHGGNQWMG GTGGYNTAGL GGIGGPFRLD AGHDVHQMPD
1501 FAKQQVPKHI LKKAREIAKV EYAKKLREIN MSEYDADAYE KVWNKVQAPS RKLASVIDQL
1561 EAKKKEREWT KHQTSGDLDD GKLIEGVTGE QNIYRRRIDK VPDPGAPQTK PKRLKVCLDV
1621 SGSMYRFNGY DQRLVKSLEA ALMTMTALDG KTDKVQYDII GHSGDSPCVS FVKTDHHPKN
1681 NKERLDTLKR MIAHTQYCVS GDNTVESLQF AIKELAAKKD DFDETVVILV SDANLERYGI
1741 QPKELKDAMA KEPNINSFVI FIGSLSDEAD QLQRELPVGK AFVLKDTSEL PKIMETIFSS
1801 TIAQ
//