LOCUS CAA90760.2 961 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Protein lin-2 protein.
ACCESSION BX284606-2998
PROTEIN_ID CAA90760.2
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="lin-2"
/locus_tag="CELE_F17E5.1"
/standard_name="F17E5.1a"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00002991"
/db_xref="EnsemblGenomes-Tr:F17E5.1a"
/db_xref="WormBase:WBGene00002991"
intron_pos 25:2 (1/23)
intron_pos 63:1 (2/23)
intron_pos 124:2 (3/23)
intron_pos 156:2 (4/23)
intron_pos 184:1 (5/23)
intron_pos 243:0 (6/23)
intron_pos 275:0 (7/23)
intron_pos 311:0 (8/23)
intron_pos 343:1 (9/23)
intron_pos 372:0 (10/23)
intron_pos 410:0 (11/23)
intron_pos 435:0 (12/23)
intron_pos 463:0 (13/23)
intron_pos 492:0 (14/23)
intron_pos 530:1 (15/23)
intron_pos 584:1 (16/23)
intron_pos 669:0 (17/23)
intron_pos 695:1 (18/23)
intron_pos 731:1 (19/23)
intron_pos 766:0 (20/23)
intron_pos 808:1 (21/23)
intron_pos 849:1 (22/23)
intron_pos 903:0 (23/23)
BEGIN
1 MRELDPDESN LLLDEQLSIR DVIEQGPFSN VYRILHGPSN RKFLLRSINL NLFRQHTGLG
61 FEEIDEEIRI CQNLQHPYIC RLEKTINSVH YRHIIFENME GNDICFEIVQ RASNGFVFSE
121 YVVSHYTRQL LDALDYCHTR KIVHRDVRPH NLVLASKDTS APLKLCGFGV AKDLSEIGGS
181 MACGRVGVPQ FMAPEIVRKD RVSCSSDIWS SGVVLFLLLA GRLPFSGSTS DIYERIMQTD
241 VDVDGYMPNI SESARNLVRR MLNADPSKRI SAKEALNHEW IRDKEHMASR KHMNDVIDQM
301 RRYNESRKLK SNVLSAVNSG RFDETTPRQD TPQTAFVDGS SPGGDCCHRG ESSSNDAAEP
361 PADKDLSGAY KVLGSLDAIN SLLDPNSYKP GSTTFQKIHD DGSVRNLLRL YDKIKALPCE
421 PVVTEVDTST LRKETLNQID GLLGPSPEAL ELRQLLNSPH LASCVQALDV VVCEIRDPKN
481 EASGSGDKEG NCVSSDPAPA YLNGGVLPLG AQRAGTSFEH FNQSAVHTSY DEEEEELYDC
541 MSRLRLVQFQ KDTQEPMGIT LKVNEDGRCF VARIMHGGMI HRQATLHVGD EIREINGMSV
601 ANRSVESLQE MLRDARGQVT FKIIPSYRSA PPACEIFVRA QFDYEPSQDD LIPCPQAGIP
661 FKTGDILQVI SKDDHNWWQA RFVSSFPSIG NSSNAQRSNQ QQVAGLIPSP ELQEWRTACL
721 AMERSKNTCN THCMWFNKKK KYYTTKYLQK HSALFDQLDL VTYEEVMRLS QYRRKTLVLL
781 GAHGVGRRHI KNTLIHRHPN RFAYPIPHTT RPPRKDEVDG KHYYFVTNEQ MMADIQNNEY
841 LEYGTHEESM YGTKLETIRN IHKSGKIAIL DVEPQALKVL RTAEYSPFVV FIAAPNLQGM
901 QDPDGSLEKL LNESDVLRQA FGHLFDFIIT NSDIDDTIAQ LERLVEKLPA YPQWLPVTWV
961 Y
//