LOCUS       CAA90618.3               686 aa    PRT              CON 06-FEB-2024
DEFINITION  Caenorhabditis elegans PHD-type domain-containing protein protein.
ACCESSION   BX284606-3173
PROTEIN_ID  CAA90618.3
SOURCE      Caenorhabditis elegans
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
            Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
            Caenorhabditis.
REFERENCE   1  (bases 1 to 17718942)
  AUTHORS   WormBase.
  CONSRTM   WormBase Consortium
  JOURNAL   Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
            Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
            help@wormbase.org
REFERENCE   2  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  JOURNAL   Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
            Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
            Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE   3  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  CONSRTM   Caenorhabditis elegans Sequencing Consortium
  TITLE     Genome sequence of the nematode C. elegans: a platform for
            investigating biology
  JOURNAL   Science 282(5396), 2012-2018(1998).
COMMENT     Annotated features correspond to WormBase release WS292.
            Protein-coding gene structures below are the result of integration
            and manual review of the following types of data: ab initio
            predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
            alignments to published proteins and cDNAs; genome sequence
            conservation with other nematodes (e.g. to C. briggsae using WABA:
            Genome Res. 2000. 10:1115-1125); sequence features (such as
            trans-splice and polyA sites).
            Sources of data: large-scale EST projects of Yuji Kohara
            (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
            cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
            sequencing project (Genome Res. 2009. 19:2334-2342); IST library
            (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
            Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
            Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
            sequencing data (454 read clusters - Makedonka Mitreva,
            unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
            Numerous data sets from the modENCODE project (Science. 2010.
            330:1775-87); Individual C. elegans Nucleotide Database
            submissions; Personal communications with C. elegans researchers;
            Non-Coding gene structures below are derived using the following
            methods and data: ab initio prediction of tRNAs by tRNAscan-SE
            (Nucl. Acids. Res., 25, 955-964); integration and appraisal of
            miRNAs from miRBase (http://www.mirbase.org); integration and
            appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
            2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
            manual curation of novel published ncRNAs from the literature.
FEATURES             Qualifiers
     source          /organism="Caenorhabditis elegans"
                     /chromosome="X"
                     /strain="Bristol N2"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:6239"
     protein         /transl_table=1
                     /gene="phf-33"
                     /locus_tag="CELE_K09A11.5"
                     /standard_name="K09A11.5"
                     /note="Partially confirmed by transcript evidence"
                     /db_xref="EnsemblGenomes-Gn:WBGene00010708"
                     /db_xref="EnsemblGenomes-Tr:K09A11.5"
                     /db_xref="GOA:Q21375"
                     /db_xref="InterPro:IPR001965"
                     /db_xref="InterPro:IPR011011"
                     /db_xref="InterPro:IPR013083"
                     /db_xref="InterPro:IPR019786"
                     /db_xref="InterPro:IPR019787"
                     /db_xref="UniProtKB/TrEMBL:Q21375"
                     /db_xref="WormBase:WBGene00010708"
     intron_pos      21:0 (1/13)
     intron_pos      58:0 (2/13)
     intron_pos      166:0 (3/13)
     intron_pos      203:2 (4/13)
     intron_pos      235:1 (5/13)
     intron_pos      278:1 (6/13)
     intron_pos      310:1 (7/13)
     intron_pos      346:1 (8/13)
     intron_pos      459:1 (9/13)
     intron_pos      497:0 (10/13)
     intron_pos      530:2 (11/13)
     intron_pos      552:2 (12/13)
     intron_pos      647:1 (13/13)
BEGIN
        1 MTKRNTNKKL APKKIKEELT DMTPKMRGEC SSSSQDHESD DDAEWDYKEQ KACCICARRG
       61 EVLWCHSCPA SFHIKCLGYD TDPQPNGTIF TCRRCQKITK TDRKKIPELT AILSANPKNR
      121 MLNEAWRNYH ASVFLYHKKE KAGPPTGPLR TQHLYAALSR LNPMNTNGIE LDEYTKTLKI
      181 PKVLLGTCPN VKLEPLEDGE LNEKNERCAK EERNFYNFIK CYKAFENLGC ALENATSSAT
      241 SGRSAASPSA PSKKIKKTQN IEGTRRITRA EAKRLELEKK KGDGDFPGCS ASGASSPVMS
      301 VPQAKLLKSE PTETDGAMYQ DLPRYSPIVT SSSAQSIHQE ESLKMEIEKH TVEQIPEHNL
      361 PLTSASSQVQ YIPPHPIFRP VPIRPTATNA ACVPSPMVDI ITLDDEIEDP SEGTPQSNFL
      421 SNDPVARNLD SSDSRNTHSS SEASNKTPKR SFGMISPSGM ESFRQSSFAN VSHFPSSCFP
      481 ASSILSFGPQ HMCSQQFSQK PPTSAAPQMG NPIFSINSTG IVTKRRYFSN SGTRFSTTKA
      541 ADMAGPSTSG RNMMNHAPLG ILTSLVFPRI YASIEVIGRS PIALTRERTF IGTDQNSNIP
      601 LQNFGVCSNW ASTHCMIAYQ NPSFCLYANH VVAVNRIRYK EFTCQNSCKC VSQLLSYPKA
      661 EKTCIILEDG DLIQIGCIVF KFRQYL
//