LOCUS CAA90618.3 686 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans PHD-type domain-containing protein protein. ACCESSION BX284606-3173 PROTEIN_ID CAA90618.3 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="phf-33" /locus_tag="CELE_K09A11.5" /standard_name="K09A11.5" /note="Partially confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00010708" /db_xref="EnsemblGenomes-Tr:K09A11.5" /db_xref="GOA:Q21375" /db_xref="InterPro:IPR001965" /db_xref="InterPro:IPR011011" /db_xref="InterPro:IPR013083" /db_xref="InterPro:IPR019786" /db_xref="InterPro:IPR019787" /db_xref="UniProtKB/TrEMBL:Q21375" /db_xref="WormBase:WBGene00010708" intron_pos 21:0 (1/13) intron_pos 58:0 (2/13) intron_pos 166:0 (3/13) intron_pos 203:2 (4/13) intron_pos 235:1 (5/13) intron_pos 278:1 (6/13) intron_pos 310:1 (7/13) intron_pos 346:1 (8/13) intron_pos 459:1 (9/13) intron_pos 497:0 (10/13) intron_pos 530:2 (11/13) intron_pos 552:2 (12/13) intron_pos 647:1 (13/13) BEGIN 1 MTKRNTNKKL APKKIKEELT DMTPKMRGEC SSSSQDHESD DDAEWDYKEQ KACCICARRG 61 EVLWCHSCPA SFHIKCLGYD TDPQPNGTIF TCRRCQKITK TDRKKIPELT AILSANPKNR 121 MLNEAWRNYH ASVFLYHKKE KAGPPTGPLR TQHLYAALSR LNPMNTNGIE LDEYTKTLKI 181 PKVLLGTCPN VKLEPLEDGE LNEKNERCAK EERNFYNFIK CYKAFENLGC ALENATSSAT 241 SGRSAASPSA PSKKIKKTQN IEGTRRITRA EAKRLELEKK KGDGDFPGCS ASGASSPVMS 301 VPQAKLLKSE PTETDGAMYQ DLPRYSPIVT SSSAQSIHQE ESLKMEIEKH TVEQIPEHNL 361 PLTSASSQVQ YIPPHPIFRP VPIRPTATNA ACVPSPMVDI ITLDDEIEDP SEGTPQSNFL 421 SNDPVARNLD SSDSRNTHSS SEASNKTPKR SFGMISPSGM ESFRQSSFAN VSHFPSSCFP 481 ASSILSFGPQ HMCSQQFSQK PPTSAAPQMG NPIFSINSTG IVTKRRYFSN SGTRFSTTKA 541 ADMAGPSTSG RNMMNHAPLG ILTSLVFPRI YASIEVIGRS PIALTRERTF IGTDQNSNIP 601 LQNFGVCSNW ASTHCMIAYQ NPSFCLYANH VVAVNRIRYK EFTCQNSCKC VSQLLSYPKA 661 EKTCIILEDG DLIQIGCIVF KFRQYL //