LOCUS CAA90444.1 692 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Polyadenylate-binding protein protein. ACCESSION BX284606-3235 PROTEIN_ID CAA90444.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="pab-2" /locus_tag="CELE_F18H3.3" /standard_name="F18H3.3a" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00003903" /db_xref="EnsemblGenomes-Tr:F18H3.3a.1" /db_xref="EnsemblGenomes-Tr:F18H3.3a.2" /db_xref="EnsemblGenomes-Tr:F18H3.3a.3" /db_xref="EnsemblGenomes-Tr:F18H3.3a.4" /db_xref="GOA:Q19579" /db_xref="InterPro:IPR000504" /db_xref="InterPro:IPR002004" /db_xref="InterPro:IPR006515" /db_xref="InterPro:IPR012677" /db_xref="InterPro:IPR035979" /db_xref="InterPro:IPR036053" /db_xref="UniProtKB/TrEMBL:Q19579" /db_xref="WormBase:WBGene00003903" intron_pos 111:1 (1/4) intron_pos 215:2 (2/4) intron_pos 470:0 (3/4) intron_pos 553:0 (4/4) BEGIN 1 MAQVPPPMTQ VVTSAPPPTA AATVVAGAVA GQPQAVIQQG PPPTNIGYPP NATYSMASLY 61 IGDLHPDVSE AMLFEKFSMA GPVLSIRVCR DNTSRLSLGY AYVNFQQPAD AERALDTMNF 121 EVIHGRPMRI MWSQRDPAAR RAGNGNIFIK NLDRVIDNKS VYDTFSLFGN ILSCKVATDD 181 EGNSKGYGFV HFETEHSAQT AIEKVNGMLL SDKKVYVGKF QPRAQRMKEL GESGLKYTNV 241 FVKNFGEHLD QEKLSAMFSK FGEITSAVVM TDAQGKPKGF GFVAFADQDA AGQAVEKLND 301 SILEGTDCKL SVCRAQKKSE RSAELKRKYE ALKQERVQRY QGVNLYVKNI EEDLNDDGLR 361 DHFSSFGTIT SAKVMVDENG RSKGFGFVCF EKPEEATAAV TDMNSKMIGA KPLYVALAQR 421 KEDRRAQLAS QYMQRLATLR MGQQASGVPA MTQLYQPGQQ GYFVPNPMNA QGRPGFQPQS 481 AQIRGPPGQR VFQNQMFMQY PFNQRQVYPQ QQGRPPMRTN DGRPQYGMAP RPAGAPRVGG 541 PGVQMGGAPI RQQGPAPRGA PQKPFYQGPP RQQQPQQHSQ QPAQQPGQQG QGQSGIVIHG 601 QETLTSHMLA QAAPQEQKQL LGERIYALIE KMFPNHKEAG KITGMMLEID NAELIMMLQD 661 AELFRSKVEE AFGVLTNAQS AAASTSAPTA KN //