LOCUS CAA88964.4 3532 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Apple domain-containing protein protein.
ACCESSION BX284602-3969
PROTEIN_ID CAA88964.4
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 15279421)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="II"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="srap-1"
/locus_tag="CELE_T06D8.1"
/standard_name="T06D8.1a"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00011522"
/db_xref="EnsemblGenomes-Tr:T06D8.1a"
/db_xref="InterPro:IPR003609"
/db_xref="InterPro:IPR009557"
/db_xref="UniProtKB/TrEMBL:G5ECB4"
/db_xref="WormBase:WBGene00011522"
intron_pos 43:1 (1/23)
intron_pos 110:1 (2/23)
intron_pos 140:1 (3/23)
intron_pos 181:1 (4/23)
intron_pos 205:1 (5/23)
intron_pos 239:1 (6/23)
intron_pos 265:2 (7/23)
intron_pos 323:1 (8/23)
intron_pos 402:1 (9/23)
intron_pos 442:0 (10/23)
intron_pos 489:1 (11/23)
intron_pos 664:1 (12/23)
intron_pos 827:1 (13/23)
intron_pos 1181:1 (14/23)
intron_pos 3095:0 (15/23)
intron_pos 3136:0 (16/23)
intron_pos 3174:0 (17/23)
intron_pos 3208:1 (18/23)
intron_pos 3223:1 (19/23)
intron_pos 3319:1 (20/23)
intron_pos 3347:1 (21/23)
intron_pos 3391:0 (22/23)
intron_pos 3445:1 (23/23)
BEGIN
1 MKPRWWHNSS SQTSQFLIFI PLLTLLASSS VNAKPLNLPQ TITCADNIYV YVNSTEADRS
61 PYIFVEIKTA TIHDCINSCF GNQFCYSLKY DQSKADSCSL FYFAAYNCTG QALVPAKSVV
121 YNGGAVTIDC LRCPSNGDFV TAPPFTSFTE QTITAVGDRG ETLIEKPLVE DITHNIDSKL
181 ESTTPSGHST AIVDLHVEDT TTAVGAETTS TSAPEPIAST KIAPVQTAQH NRKGNYYPAC
241 YINFQVEEIS TQPNFDHYTI KPAKSANACA RFCFVGLCTV AVYSPSTGEC RLGRDRREKC
301 TDSENKFSYT GADDVVLQCF RCSSKKVPPT ADVTKTTVSF QEEEHVTTQA KADETTTAEP
361 STTTATESST SLAESNDQEP AVATKVEMAK DKEGVKTTQR KHCVIKFQAR PLSDRPENLK
421 AKFELNVPVD SIELCATRCY QDGCSGARFD PADRSCTLSY DDPQFCARGN VFIHYEAKEA
481 TWLHCVNCYT VKPSDFDEVR TGTTAATPKG IESTTVASSE TTSAEAVTTT QKQADITSTT
541 AAPELTSSAS QESTTTTVAT STVKQSESDG SDDFQRGCLI KFQARPLTER PKELSAKFET
601 EIKVDSVEMC ATRCYQDGCS GARFDPVWST CSLSYDEKHF CARGDVFLQY MAKEVTWIHC
661 VNCYAIKSTA AADLPKVPSK TNDDNEITTT SAPAAVTNPW GETETPLSEG EKTTTSSPKE
721 EAATLKTIGQ EVDDDSLLKG CIVHFQSQPI EERNKEFTAP FELNLKVPTA EICAHRCYQD
781 GCTAAKYDPS TQQCSLAYED KPFCGNGRLV NIDRSDKTVW IHCLSCVPLK NSKPAENTDG
841 EVTESNLPDG SGEHGADTAS GEEPTSTPIT APTDFSNDDQ VTEASGEETT TAAATEASSE
901 ETTTSAVTEG SGEETTVPTT VESSGEEPAL SSTSVPTELS KDDQVTEASG EETTTAAATE
961 ASSEETTTPA VTEASGEEST TSAVTEGSGE EITVPTTVES SGEEPALSST SVPTELSKDD
1021 QVTEASGEET TTAAATEASS EETTTPAVTE ASGEESTTSA VTEGSGEEIT VHTTVESSGE
1081 EPAISSTSIP TELSKDDQVT EASGEETTTA AATEASLEAT TTPAVTEASG EEITTSAVTE
1141 ESGEETTVVA VVESSGEEQA SSSTSIPTEL SKDDQVTEAS GEETTTAAAT EASSEATTTP
1201 AVTEASGEET TVVAVVESSG EEPASSSTSI PTELSKDNQV TEASGEETNT AAVTEGSGEE
1261 TTTAAATETS SEETTISAVT EASGEETTVV AVVQSSGEEP ASSSTSIPTE LSKDDQVTEA
1321 SGEETTTAAA TEASSEETTT LAVTEGSGEE TTVVAVVESS GEEPASSSTS IPTELSKDDQ
1381 VTEASGEETT TAAVTEGSGE ETVTPAATEA SSEATTTPAG TEASGEETTT SAVTEGSGEE
1441 NTVVAVVESS GEEPASSSTS IPTELSNDDQ VTEGSGEETT TAAATETSSE ETTTSVVTEG
1501 SGEETTTSAV TEASGEETTT SAVTEGSGEE NTVVAVVQSS GEEPASSSTS IPTELSKDDQ
1561 VTEASGEETT TAAATEASSE ETTTSAVTEG SGEETTTSAV SEGSGDETTT AAATEASSEE
1621 TITSAVTEGS GEETTTSAVT EGSGEETTTA AATEASSEET ITSAVTEGSG EETTTSAVTE
1681 GSGEEITVPT TVESSGEEPA LSSMSIPTEL SKDDQVTEAS GEETTTAAAT ETSSEETTTS
1741 VVTEGSGEQT TVVAVVESSG EEPASSSTSI PTELSKDDQV TEASGEETTT AAATEASSEE
1801 TITSAVTEGS GEETTVVAVV ESSGEEPASS STSVPTELSK DDQVTEASGE ETTTAAATEA
1861 SSEETTTSAV TEGSGEETTT SAVTEASSEA TTTPAGTEAS GEETTTSAVT EGSGEETTVV
1921 AVVESSGEEP ASSSTSIPTE LSKNDQVTEA SGEETITAAA TEASEETTTS AVTEGSGEDT
1981 TVVAVVELSG EQPASSSTSI PTELSKDDQV TEASGEETTT AAATEASEET TTSAVTEGSG
2041 EETTVVAVVE SSGEEPASSS TSIPTELSKD DQVTEASGEE TTTAAATEAS EETTTSAVTE
2101 GSGEDTTVVA VVESSGEQPA SSSTSIPTEL SKDDQVTEAS GEETTTAAAT EASEETTTSA
2161 VTEGSGEDTT VVAVVESSGE QPASSSTSIP TELSKDDQVT EASGEETTTA AATEASEETT
2221 TSAVTEGSGE ETTVVAVVES SGEEPASSST SIPTELSKDD KVTEASGEET TTAAATDASS
2281 EETTTSAVTE GSGEETTVVA VVESSDEEPA SSSTSIPTEL SKDDQVTEAS GEETTTAAAT
2341 EASEETTTSA VTEGSGEETT VVAVVESSGE EPASSSTSIP TELSKDDKVT EASGEETTTA
2401 AATDASSEET TTSAVTEGSG EETTVVAVVE SSDEEPASSS TSIPTELSKD DQVTEASGEE
2461 TTTAAATEAS EETTTSAVTE GSGEETTVVA VVESSGEEPA SSSTSIPTEL SKDDQVTEAS
2521 GEETTTAAAT EASEETTTSA VTEGSGEDTT VVAVVESSGE QPASSSTSIP TELSKDDQVT
2581 EASGEETTTA AATEASEETT TSAVTEGSGE ETTVVAVVES SGEEPASSST SIPTELSKDD
2641 QVTEASGEET TTAAATEASS EETTTSAVTE GSGEETTTSA VTEGSGEETT TSAVPEGENS
2701 TTEAPAFVTG SEIEIPSSEE SSSTTTHDPS IPVITPKPSV SSTIENVMSK TSSEEAAEKK
2761 IIGEHQTGKD DDAGKEDEDN MPAFVTANPA GTSTTESAEN VTSTGEEDEN IKMAKELGKQ
2821 FAADLAKLAA KDGVNLTETA DAKDSGETAH VEDEQVSSTE SSIGSEETTT TVNKETTEEH
2881 HEASGEEDDA PAFVTGAPTD STTEASVSTT SAITDETTSV AADESTSTSA GEVQSSSAII
2941 DSATVASEEQ TSSEATSVIE SSGEEVTTTD ENLVTSTVAQ LEEGSGITAA ESKDEDSVTT
3001 EATSQSTTVS ESSDGSGEST VAPNDSETST TESSQSTTDE GSGVTAAESK DEESSTTEAP
3061 AFVTSKTSGS EEDEEDSPDT HEFLTGIDET MFNKSLVPDT HREDLPNNVG FVPSSEPKPK
3121 NPDEEEEEEE DDGTKSDDYE DNVSKKISST SAPTTTTTEA AGATTEPPVQ LVKDLIDALA
3181 AGGLDFVLGR PRKPTSQAAQ DMINRKLGPI QRLLPQAIEN KHECTTGRVR FVASEMVDLS
3241 QHFERDAVAF SLEHCARMCF ETSCVRAAFT RFPRPVCLMH YADQKTAHLD TNCTDVTPTT
3301 SWTFTKINQV VAIDCVTCAD EKKTHDITSF SVDEPSSSSD NIPLHQGLSS KCDGRVEFQV
3361 IPVASLPKLN ITNDVPASSP ADCARKCFEM KNCKTAGFIP SPSGTIAQGV CLLTSDDVVC
3421 GNLADFVPQH AALHPFVVSC IRCTSCTYNI RPVTPTRTMP TMKVHEQADN VQECAKLCAD
3481 MKCTMAKYEN NTKICSMTRE PVTEETCPQE VATQIHDSLL PVSIECVKCS GN
//