LOCUS CAA87328.1 776 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Intermediate filament protein ifp-1 protein. ACCESSION BX284606-2284 PROTEIN_ID CAA87328.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="ifp-1" /locus_tag="CELE_C43C3.1" /standard_name="C43C3.1" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00002067" /db_xref="EnsemblGenomes-Tr:C43C3.1" /db_xref="WormBase:WBGene00002067" intron_pos 38:0 (1/9) intron_pos 76:0 (2/9) intron_pos 171:0 (3/9) intron_pos 297:0 (4/9) intron_pos 352:0 (5/9) intron_pos 645:1 (6/9) intron_pos 669:0 (7/9) intron_pos 720:0 (8/9) intron_pos 756:0 (9/9) BEGIN 1 MDSANARDCL LHLARAKLSE RQDLVQLNDQ FVDIIEHVHY MEAEHTALEH DYNLLKSGVQ 61 SDSSGINEIY NVEIRTVRSG IEEINRSRHE LLNEQTQLSH QVKEAEQLWR HTAKSALGVP 121 KEVDDEFHRI CHIKMEDCIT KRRIKYMEDK LRLIKQNNGR IFEHINLMRM RKDQAVSLQQ 181 EYLLRKNELL HSIRNMEEDN KKIIMNEHKY FVRDRNADRH VFRDQLRKAI ADIRADYEAN 241 RLRNEEEIRI RLEREIHRMN TTMPGVVCYD KLREELSIVK NNLSGLQKQV SEVEIRNNSL 301 TQQIEFYRLE ISENNKLFED TLEFKIKEIE KMREQCTAIS VELEKLCDLN IDLQKEIAKY 361 RELLDRSGDP RANAPSTQVI ASALSRQNYS SISDHHSRTS SGIVQHTAHH AVRDSSSSRT 421 GTTIHETITH TPIPIPATLP VQPIREYTYS RDASPIRPSY TPYQQESRAD SRSSLRERIQ 481 IETLQGTLPV LPSHSVETIR ASDNTRLVRD LSAGGQINTT QINNPYASRT PTSSVNDRIA 541 SERRDSEIRR NDALHQPYPI GGAVPRVEPT IFNERAPGYT HINSNFPLIT PVTEGATVPS 601 YYDTFNRNSS QRGPHHSSYH AATGSVSNSI STTLLNEGSI EHSSSSDSVD EDNFQRFTRW 661 YKGRVKISDV TADFVQLVNR SSKKSADVGG FKLIHEFGNK SVYVDLPVGL ILAPKDSLKI 721 YARGATHERG AVIAEIDFFD TTIHTNTSIR NTNNEVKSWF VYTSNTEIGD ADHHHH //