LOCUS       CAA87328.1               776 aa    PRT              CON 06-FEB-2024
DEFINITION  Caenorhabditis elegans Intermediate filament protein ifp-1 protein.
ACCESSION   BX284606-2284
PROTEIN_ID  CAA87328.1
SOURCE      Caenorhabditis elegans
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
            Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
            Caenorhabditis.
REFERENCE   1  (bases 1 to 17718942)
  AUTHORS   WormBase.
  CONSRTM   WormBase Consortium
  JOURNAL   Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
            Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
            help@wormbase.org
REFERENCE   2  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  JOURNAL   Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
            Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
            Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE   3  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  CONSRTM   Caenorhabditis elegans Sequencing Consortium
  TITLE     Genome sequence of the nematode C. elegans: a platform for
            investigating biology
  JOURNAL   Science 282(5396), 2012-2018(1998).
COMMENT     Annotated features correspond to WormBase release WS292.
            Protein-coding gene structures below are the result of integration
            and manual review of the following types of data: ab initio
            predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
            alignments to published proteins and cDNAs; genome sequence
            conservation with other nematodes (e.g. to C. briggsae using WABA:
            Genome Res. 2000. 10:1115-1125); sequence features (such as
            trans-splice and polyA sites).
            Sources of data: large-scale EST projects of Yuji Kohara
            (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
            cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
            sequencing project (Genome Res. 2009. 19:2334-2342); IST library
            (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
            Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
            Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
            sequencing data (454 read clusters - Makedonka Mitreva,
            unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
            Numerous data sets from the modENCODE project (Science. 2010.
            330:1775-87); Individual C. elegans Nucleotide Database
            submissions; Personal communications with C. elegans researchers;
            Non-Coding gene structures below are derived using the following
            methods and data: ab initio prediction of tRNAs by tRNAscan-SE
            (Nucl. Acids. Res., 25, 955-964); integration and appraisal of
            miRNAs from miRBase (http://www.mirbase.org); integration and
            appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
            2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
            manual curation of novel published ncRNAs from the literature.
FEATURES             Qualifiers
     source          /organism="Caenorhabditis elegans"
                     /chromosome="X"
                     /strain="Bristol N2"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:6239"
     protein         /transl_table=1
                     /gene="ifp-1"
                     /locus_tag="CELE_C43C3.1"
                     /standard_name="C43C3.1"
                     /note="Confirmed by transcript evidence"
                     /db_xref="EnsemblGenomes-Gn:WBGene00002067"
                     /db_xref="EnsemblGenomes-Tr:C43C3.1"
                     /db_xref="WormBase:WBGene00002067"
     intron_pos      38:0 (1/9)
     intron_pos      76:0 (2/9)
     intron_pos      171:0 (3/9)
     intron_pos      297:0 (4/9)
     intron_pos      352:0 (5/9)
     intron_pos      645:1 (6/9)
     intron_pos      669:0 (7/9)
     intron_pos      720:0 (8/9)
     intron_pos      756:0 (9/9)
BEGIN
        1 MDSANARDCL LHLARAKLSE RQDLVQLNDQ FVDIIEHVHY MEAEHTALEH DYNLLKSGVQ
       61 SDSSGINEIY NVEIRTVRSG IEEINRSRHE LLNEQTQLSH QVKEAEQLWR HTAKSALGVP
      121 KEVDDEFHRI CHIKMEDCIT KRRIKYMEDK LRLIKQNNGR IFEHINLMRM RKDQAVSLQQ
      181 EYLLRKNELL HSIRNMEEDN KKIIMNEHKY FVRDRNADRH VFRDQLRKAI ADIRADYEAN
      241 RLRNEEEIRI RLEREIHRMN TTMPGVVCYD KLREELSIVK NNLSGLQKQV SEVEIRNNSL
      301 TQQIEFYRLE ISENNKLFED TLEFKIKEIE KMREQCTAIS VELEKLCDLN IDLQKEIAKY
      361 RELLDRSGDP RANAPSTQVI ASALSRQNYS SISDHHSRTS SGIVQHTAHH AVRDSSSSRT
      421 GTTIHETITH TPIPIPATLP VQPIREYTYS RDASPIRPSY TPYQQESRAD SRSSLRERIQ
      481 IETLQGTLPV LPSHSVETIR ASDNTRLVRD LSAGGQINTT QINNPYASRT PTSSVNDRIA
      541 SERRDSEIRR NDALHQPYPI GGAVPRVEPT IFNERAPGYT HINSNFPLIT PVTEGATVPS
      601 YYDTFNRNSS QRGPHHSSYH AATGSVSNSI STTLLNEGSI EHSSSSDSVD EDNFQRFTRW
      661 YKGRVKISDV TADFVQLVNR SSKKSADVGG FKLIHEFGNK SVYVDLPVGL ILAPKDSLKI
      721 YARGATHERG AVIAEIDFFD TTIHTNTSIR NTNNEVKSWF VYTSNTEIGD ADHHHH
//