LOCUS CAA86428.2 1215 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Nucleolar protein 16 protein.
ACCESSION BX284606-2233
PROTEIN_ID CAA86428.2
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="F49E2.5"
/locus_tag="CELE_F49E2.5"
/standard_name="F49E2.5a"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00009888"
/db_xref="EnsemblGenomes-Tr:F49E2.5a.1"
/db_xref="EnsemblGenomes-Tr:F49E2.5a.2"
/db_xref="InterPro:IPR006836"
/db_xref="UniProtKB/TrEMBL:Q20626"
/db_xref="WormBase:WBGene00009888"
intron_pos 37:2 (1/17)
intron_pos 67:0 (2/17)
intron_pos 211:0 (3/17)
intron_pos 285:0 (4/17)
intron_pos 368:0 (5/17)
intron_pos 412:0 (6/17)
intron_pos 553:0 (7/17)
intron_pos 738:0 (8/17)
intron_pos 768:0 (9/17)
intron_pos 791:0 (10/17)
intron_pos 854:0 (11/17)
intron_pos 906:0 (12/17)
intron_pos 1047:1 (13/17)
intron_pos 1094:0 (14/17)
intron_pos 1134:0 (15/17)
intron_pos 1164:0 (16/17)
intron_pos 1189:0 (17/17)
BEGIN
1 MRSPKSVRRP HIRQQLTNRR KNLGRVAKSQ RNQFRQWLLT AVLPNSINDQ RKEAFASLEL
61 TEQPQQVEKV KKSEKKKAQK QIAKDHEAEQ KVNAKKAAEK EARRAEAEAK KRAAQEEEHK
121 QWKAEQERIQ KEQEKKEADL KKLQAEKKKE KAVKAEKAEK AEKTKKASTP APVEEEIVVK
181 KVANDRSAAP APEPKTPTNT PAEPAEQVQE ITGKKNKKNK KKSESEATAA PASVEQVVEQ
241 PKVVTEEPHQ QAAPQEKKNK KNKRKSESEN VPAASETPVE PVVETTPPAS ENQKKNKKDK
301 KKSESEKVVE EPVQAEAPKS KKPTADDNMD FLDFVTAKEE PKDEPAETPA APVEEVVENV
361 VENVVEKSTT PPATENKKKN KKDKKKSESE KVTEQPVESA PAPPQVEQVV ETTPPASENK
421 KKNKKDKKKS ESEKAVEEPV QAAPSSKKPT ADDSMDFLDF VTAKPDRSEV AAPVEVAKVD
481 ESTAVTSENR KKNKKDKKKS ESEKAVEEPV QAAPTSKKPT ADDSMDFLDF VTAKEERVEE
541 VAPVQEQVKE QKNESPESEP VAKLITVSNT EASAVNVMGF SDIVTPKADE VITQDPVSAK
601 QEVLPEHVPS EIPEEPVAVS KKPTADSMDF LDFVTPKTEA ESTSEAPAPV VSKPTESIED
661 LEIVTYEHVA DVTGNTLSPS QHSTPSPNSV LLNGPQSKSS KRKHHHKKNK KRTDSEMSQE
721 PSKEDLEFLE FLHSEPKKVE KPVAPVSKKP TADDNMDFLD FVTAKPEKTE SVEEHIEAPM
781 IVEPVHAENE TAAAAGGKKK NKKNKNKKNS ESESTPAAEP VKEVTPEIVE EVFEKKTITP
841 STAAAAAPAP GSKKNKKNKK NSESESAPAA EPVKEVTPEI VEEVFEKKTV TPSTEAAAAP
901 ASASKKNKKN KKGSGISESH DTAPAPTVEI PQTTEGGKGS PGSDKENSGS AVNGSAKKQM
961 SVEELDYGVP GQTTDTTTDK KNKKKNKKGK NSNSISENAQ VIAHLEQDHL DQMADDEVQA
1021 ITGAAGSHSP PIQVHEVTSS EQHSNGVEKN TTIEITQAVD GTDMSQTQFQ KNVEKLVQAT
1081 LAKHDIVEID PTVKLRIDAQ LIKLSEKKAP AVVMEHVNYI KPLPMELHVS RPSTPSRDRV
1141 YKLLPKDIIF CAGLMDSHGE NYAAMAADER NIFKDTSRAL QRKIRIFKES PHYHTYLRAK
1201 EENRPIEEVI AEAQH
//