LOCUS CAA86427.2 889 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Nucleolar protein 16 protein. ACCESSION BX284606-2236 PROTEIN_ID CAA86427.2 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="F49E2.5" /locus_tag="CELE_F49E2.5" /standard_name="F49E2.5d" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00009888" /db_xref="EnsemblGenomes-Tr:F49E2.5d.1" /db_xref="EnsemblGenomes-Tr:F49E2.5d.2" /db_xref="InterPro:IPR006836" /db_xref="UniProtKB/TrEMBL:O45544" /db_xref="WormBase:WBGene00009888" intron_pos 37:2 (1/15) intron_pos 67:0 (2/15) intron_pos 211:0 (3/15) intron_pos 285:0 (4/15) intron_pos 368:0 (5/15) intron_pos 412:0 (6/15) intron_pos 442:0 (7/15) intron_pos 465:0 (8/15) intron_pos 528:0 (9/15) intron_pos 580:0 (10/15) intron_pos 721:1 (11/15) intron_pos 768:0 (12/15) intron_pos 808:0 (13/15) intron_pos 838:0 (14/15) intron_pos 863:0 (15/15) BEGIN 1 MRSPKSVRRP HIRQQLTNRR KNLGRVAKSQ RNQFRQWLLT AVLPNSINDQ RKEAFASLEL 61 TEQPQQVEKV KKSEKKKAQK QIAKDHEAEQ KVNAKKAAEK EARRAEAEAK KRAAQEEEHK 121 QWKAEQERIQ KEQEKKEADL KKLQAEKKKE KAVKAEKAEK AEKTKKASTP APVEEEIVVK 181 KVANDRSAAP APEPKTPTNT PAEPAEQVQE ITGKKNKKNK KKSESEATAA PASVEQVVEQ 241 PKVVTEEPHQ QAAPQEKKNK KNKRKSESEN VPAASETPVE PVVETTPPAS ENQKKNKKDK 301 KKSESEKVVE EPVQAEAPKS KKPTADDNMD FLDFVTAKEE PKDEPAETPA APVEEVVENV 361 VENVVEKSTT PPATENKKKN KKDKKKSESE KVTEQPVESA PAPPQVEQVV EKVEKPVAPV 421 SKKPTADDNM DFLDFVTAKP EKTESVEEHI EAPMIVEPVH AENETAAAAG GKKKNKKNKN 481 KKNSESESTP AAEPVKEVTP EIVEEVFEKK TITPSTAAAA APAPGSKKNK KNKKNSESES 541 APAAEPVKEV TPEIVEEVFE KKTVTPSTEA AAAPASASKK NKKNKKGSGI SESHDTAPAP 601 TVEIPQTTEG GKGSPGSDKE NSGSAVNGSA KKQMSVEELD YGVPGQTTDT TTDKKNKKKN 661 KKGKNSNSIS ENAQVIAHLE QDHLDQMADD EVQAITGAAG SHSPPIQVHE VTSSEQHSNG 721 VEKNTTIEIT QAVDGTDMSQ TQFQKNVEKL VQATLAKHDI VEIDPTVKLR IDAQLIKLSE 781 KKAPAVVMEH VNYIKPLPME LHVSRPSTPS RDRVYKLLPK DIIFCAGLMD SHGENYAAMA 841 ADERNIFKDT SRALQRKIRI FKESPHYHTY LRAKEENRPI EEVIAEAQH //