LOCUS       CAA86427.2               889 aa    PRT              CON 06-FEB-2024
DEFINITION  Caenorhabditis elegans Nucleolar protein 16 protein.
ACCESSION   BX284606-2236
PROTEIN_ID  CAA86427.2
SOURCE      Caenorhabditis elegans
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
            Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
            Caenorhabditis.
REFERENCE   1  (bases 1 to 17718942)
  AUTHORS   WormBase.
  CONSRTM   WormBase Consortium
  JOURNAL   Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
            Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
            help@wormbase.org
REFERENCE   2  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  JOURNAL   Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
            Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
            Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE   3  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  CONSRTM   Caenorhabditis elegans Sequencing Consortium
  TITLE     Genome sequence of the nematode C. elegans: a platform for
            investigating biology
  JOURNAL   Science 282(5396), 2012-2018(1998).
COMMENT     Annotated features correspond to WormBase release WS292.
            Protein-coding gene structures below are the result of integration
            and manual review of the following types of data: ab initio
            predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
            alignments to published proteins and cDNAs; genome sequence
            conservation with other nematodes (e.g. to C. briggsae using WABA:
            Genome Res. 2000. 10:1115-1125); sequence features (such as
            trans-splice and polyA sites).
            Sources of data: large-scale EST projects of Yuji Kohara
            (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
            cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
            sequencing project (Genome Res. 2009. 19:2334-2342); IST library
            (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
            Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
            Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
            sequencing data (454 read clusters - Makedonka Mitreva,
            unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
            Numerous data sets from the modENCODE project (Science. 2010.
            330:1775-87); Individual C. elegans Nucleotide Database
            submissions; Personal communications with C. elegans researchers;
            Non-Coding gene structures below are derived using the following
            methods and data: ab initio prediction of tRNAs by tRNAscan-SE
            (Nucl. Acids. Res., 25, 955-964); integration and appraisal of
            miRNAs from miRBase (http://www.mirbase.org); integration and
            appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
            2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
            manual curation of novel published ncRNAs from the literature.
FEATURES             Qualifiers
     source          /organism="Caenorhabditis elegans"
                     /chromosome="X"
                     /strain="Bristol N2"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:6239"
     protein         /transl_table=1
                     /gene="F49E2.5"
                     /locus_tag="CELE_F49E2.5"
                     /standard_name="F49E2.5d"
                     /note="Confirmed by transcript evidence"
                     /db_xref="EnsemblGenomes-Gn:WBGene00009888"
                     /db_xref="EnsemblGenomes-Tr:F49E2.5d.1"
                     /db_xref="EnsemblGenomes-Tr:F49E2.5d.2"
                     /db_xref="InterPro:IPR006836"
                     /db_xref="UniProtKB/TrEMBL:O45544"
                     /db_xref="WormBase:WBGene00009888"
     intron_pos      37:2 (1/15)
     intron_pos      67:0 (2/15)
     intron_pos      211:0 (3/15)
     intron_pos      285:0 (4/15)
     intron_pos      368:0 (5/15)
     intron_pos      412:0 (6/15)
     intron_pos      442:0 (7/15)
     intron_pos      465:0 (8/15)
     intron_pos      528:0 (9/15)
     intron_pos      580:0 (10/15)
     intron_pos      721:1 (11/15)
     intron_pos      768:0 (12/15)
     intron_pos      808:0 (13/15)
     intron_pos      838:0 (14/15)
     intron_pos      863:0 (15/15)
BEGIN
        1 MRSPKSVRRP HIRQQLTNRR KNLGRVAKSQ RNQFRQWLLT AVLPNSINDQ RKEAFASLEL
       61 TEQPQQVEKV KKSEKKKAQK QIAKDHEAEQ KVNAKKAAEK EARRAEAEAK KRAAQEEEHK
      121 QWKAEQERIQ KEQEKKEADL KKLQAEKKKE KAVKAEKAEK AEKTKKASTP APVEEEIVVK
      181 KVANDRSAAP APEPKTPTNT PAEPAEQVQE ITGKKNKKNK KKSESEATAA PASVEQVVEQ
      241 PKVVTEEPHQ QAAPQEKKNK KNKRKSESEN VPAASETPVE PVVETTPPAS ENQKKNKKDK
      301 KKSESEKVVE EPVQAEAPKS KKPTADDNMD FLDFVTAKEE PKDEPAETPA APVEEVVENV
      361 VENVVEKSTT PPATENKKKN KKDKKKSESE KVTEQPVESA PAPPQVEQVV EKVEKPVAPV
      421 SKKPTADDNM DFLDFVTAKP EKTESVEEHI EAPMIVEPVH AENETAAAAG GKKKNKKNKN
      481 KKNSESESTP AAEPVKEVTP EIVEEVFEKK TITPSTAAAA APAPGSKKNK KNKKNSESES
      541 APAAEPVKEV TPEIVEEVFE KKTVTPSTEA AAAPASASKK NKKNKKGSGI SESHDTAPAP
      601 TVEIPQTTEG GKGSPGSDKE NSGSAVNGSA KKQMSVEELD YGVPGQTTDT TTDKKNKKKN
      661 KKGKNSNSIS ENAQVIAHLE QDHLDQMADD EVQAITGAAG SHSPPIQVHE VTSSEQHSNG
      721 VEKNTTIEIT QAVDGTDMSQ TQFQKNVEKL VQATLAKHDI VEIDPTVKLR IDAQLIKLSE
      781 KKAPAVVMEH VNYIKPLPME LHVSRPSTPS RDRVYKLLPK DIIFCAGLMD SHGENYAAMA
      841 ADERNIFKDT SRALQRKIRI FKESPHYHTY LRAKEENRPI EEVIAEAQH
//