LOCUS CAA86411.2 515 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans PH domain-containing protein protein. ACCESSION BX284606-2227 PROTEIN_ID CAA86411.2 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="C07B5.4" /locus_tag="CELE_C07B5.4" /standard_name="C07B5.4a" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00007409" /db_xref="EnsemblGenomes-Tr:C07B5.4a" /db_xref="GOA:Q17777" /db_xref="InterPro:IPR001849" /db_xref="InterPro:IPR012966" /db_xref="UniProtKB/TrEMBL:Q17777" /db_xref="WormBase:WBGene00007409" intron_pos 14:0 (1/11) intron_pos 53:2 (2/11) intron_pos 78:1 (3/11) intron_pos 118:2 (4/11) intron_pos 165:0 (5/11) intron_pos 216:1 (6/11) intron_pos 294:0 (7/11) intron_pos 387:1 (8/11) intron_pos 432:0 (9/11) intron_pos 472:1 (10/11) intron_pos 492:0 (11/11) BEGIN 1 MSDGVVVCEV RNSKKKSCQQ YHLLYEDKIQ IVKELNNILP LEEEEMLPGD GLGLSPTSSR 61 ANVGLSQISL PLAWKPKETR TFSMFLVIQS KTRVIDTKII SHVDKNMTDV IIPDSFVFDN 121 EPEDFNVDIL IYAARTDYGL ENNTGGSLKS RITRSIGRKF GSSVKSQVST PEMLKSPRLD 181 QTISGAHYNL LAKATLSIAD ACEEATIHNL RMSAFADLSG PPLYGHIICR LAIQPHSVLR 241 PILEGVLSVQ HVEEGVELEN TAARLQAGNL HFYSIGDIAN SSKNTVLIIP LSSRSRIVPT 301 PSARTFLLRT DESKEVPASS VYIVTNSDRD YEIWRRAIEI QIYDIGIWGR FATKISSLLT 361 QKREDPIRET LSRGTGSNLY ETISIKGSIS KAFGGLSLVP CDGQPHPNGA ATAPVKRPQV 421 KQRAKVIDFF QAQSPKPSRK SIIHEPSSNY VIQLNIGEDV MENEYNSYSP LYRMSPRPPS 481 SYRHHSDDQY KDGKKSWSKS IGSLINRNAS HVTRL //