LOCUS CAA77422.1 196 aa PRT PLN 14-NOV-2006 DEFINITION Nicotiana tabacum ATP-dependent protease proteolytic subuni protein. ACCESSION Z00044-53 PROTEIN_ID CAA77422.1 SOURCE chloroplast Nicotiana tabacum (common tobacco) ORGANISM Nicotiana tabacum Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana. REFERENCE 1 (bases 1 to 155844) AUTHORS Shinozaki K., Ohme M., Tanaka M., Wakasugi T., Hayashida N., Matsubayashi T., Zaita N., Chunwongse J., Obokata J., Yamaguchi-Shinozaki K., Ohto C., Torazawa K., Meng B.Y., Sugita M., Deno H., Kamogashira T., Yamada K., Kusuda J., Takaiwa F., Kato A., Tohdoh N., Shimada H., Sugiura M. TITLE The complete nucleotide sequence of the tobacco chloroplast genome: its gene organization and expression JOURNAL EMBO J. 5(9), 2043-2049(1986). PUBMED 16453699 REFERENCE 2 AUTHORS Sugiura M. JOURNAL Submitted (12-AUG-1986) to the INSDC. REFERENCE 3 AUTHORS Shimada H., Sugiura M. TITLE Fine structural features of the chloroplast genome: comparison of the sequenced chloroplast genomes JOURNAL Nucleic Acids Res. 19(5), 983-995(1991). PUBMED 1708498 REFERENCE 4 AUTHORS Mitchelson K., Stephen J. TITLE Processing of histidine transfer RNA precursors in tobacco chloroplasts JOURNAL Nucleic Acids Res. 19(11), 3150-3150(1991). PUBMED 2057370 REFERENCE 5 (bases 31640 to 32290;90230 to 91610) AUTHORS Ayliffe M.A., Timmis J.N. TITLE Plastid DNA sequence homologies in the tobacco nuclear genome JOURNAL Mol. Gen. Genet. 236(1), 105-112(1992). PUBMED 1337369 REFERENCE 6 (bases 1 to 155844) AUTHORS Morton B.R., Clegg M.T. TITLE A chloroplast DNA mutational hotspot and gene conversion in a noncoding region near rbcL in the grass family (Poaceae) JOURNAL Curr. Genet. 24(4), 357-365(1993). PUBMED 8252646 REFERENCE 7 (bases 1 to 155844) AUTHORS Kunnimalaiyaan M., Nielsen B.L. TITLE Fine mapping of replication origins (ori A and ori B) in Nicotiana tabacum chloroplast DNA JOURNAL Nucleic Acids Res. 25(18), 3681-3686(1997). PUBMED 9278490 REFERENCE 8 AUTHORS Tsudsuki T. JOURNAL Submitted (27-FEB-1998) to the INSDC. T. Tsudzuki, Data Processing Center, Aichi-Gakuin University, 12 Araike, Iwasaki, Nisshin, Aichi 470-0195, JAPAN REMARK revised by [10] REFERENCE 9 (bases 1 to 155943) AUTHORS Nadot S., Bittar G., Carter L., Lacroix R., Lejeune B. TITLE A phylogenetic analysis of monocotyledons based on the chloroplast gene rps4, using parsimony and a new numerical phenetics method JOURNAL Mol. Phylogenet. Evol. 4(3), 257-282(1995). PUBMED 8845963 REFERENCE 10 (bases 1 to 155943) AUTHORS Yukawa M. JOURNAL Submitted (26-SEP-2005) to the INSDC. Yukawa M., Graduate School of Natural Sciences, Nagoya City University, Yamanohata, Mizuho, Nagoya, Japan COMMENT The circular tobacco chloroplast DNA sequence is presented in a linearized form by cutting at the junction (JLA) between IRA and LSC. JLA is designated zero and numbered proceeding towards LSC. The DNA strand which codes for the large subunit of ribulose 1,5-bisphosphate carboxylase is designated as A strand and the complementary strand as B strand. Nucleotide sequence of the B strand is presented. Large single copy region (LSC): 1 - 86686 (86686 bp) Inverted repeat B (IRB) : 86687 - 112027 (25341 bp) Small single copy region (SSC): 112028 - 130598 (18571 bp) Inverted repeat A (IRA) : 130599 - 155939 (25341 bp) FEATURES Qualifiers source /organism="Nicotiana tabacum" /organelle="plastid:chloroplast" /cultivar="bright yellow 4" /mol_type="genomic DNA" /db_xref="taxon:4097" protein /transl_table=11 /gene="clpP1" /db_xref="GOA:P12210" /db_xref="InterPro:IPR001907" /db_xref="InterPro:IPR018215" /db_xref="InterPro:IPR023562" /db_xref="InterPro:IPR029045" /db_xref="InterPro:IPR033135" /db_xref="UniProtKB/Swiss-Prot:P12210" intron_pos 24:2 (1/2) intron_pos 122:0 (2/2) BEGIN 1 MPIGVPKVPF RSPGEEDASW VDVYNRLYRE RLLFLGQEVD SEISNQLIGL MVYLSIEDET 61 KDLYLFINSP GGWVIPGVAI YDTMQFVRPD VHTICMGLAA SMGSFILVGG EITKRLAFPH 121 ARVMIHQPAS SFYEAQTGEF VLEAEELLKL RETLTRVYVQ RTGKPLWVVS EDMERDVFMS 181 ATEAQAYGIV DLVAVE //