LOCUS CAA15516.1 808 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Abnormal pharyngeal pumping eat-20 protein. ACCESSION BX284606-3712 PROTEIN_ID CAA15516.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="eat-20" /locus_tag="CELE_H30A04.1" /standard_name="H30A04.1a" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00001148" /db_xref="WormBase:WBGene00001148" intron_pos 12:1 (1/13) intron_pos 57:2 (2/13) intron_pos 86:1 (3/13) intron_pos 137:1 (4/13) intron_pos 187:1 (5/13) intron_pos 205:0 (6/13) intron_pos 295:0 (7/13) intron_pos 342:2 (8/13) intron_pos 385:1 (9/13) intron_pos 426:1 (10/13) intron_pos 459:1 (11/13) intron_pos 711:1 (12/13) intron_pos 755:1 (13/13) BEGIN 1 MTTFCRVLLI FGIYVAVCCA QSVEDDVFHF TNPSQGNAVW ILDESSLPWT GGYQFLRSIS 61 GMPTTLLSVV DSSTGVTLGQ CVAPQDATGN FSKRWERFSW ELTASGLDCT FEHGAAIRVE 121 FDRTQNPRTF SIRIQSITGP ACLRDVVVQT EQATGCPPHL SRNSFTANAL NCSCPFLDAA 181 NEDSEIENED VDMLANTPQF PLFKGIDPSV LGSANPPTLP PSPCANHECH NNGTCLVSQE 241 GAATCLCRNG FTGDRCELDV CSSVPCQNGG VCRSNNGIAY CECPPAFTGL LCESAHTDES 301 VAPICRPECS NGQCVFKDGQ AQCECRQGFT GANCNVLDVC LGDAACSMFG PLAKCVLDDN 361 MDKMSSLTLI NGTYDCLCPH PIHGQFVDCM QLHAPSATSV QPTEQVVINN VTPSFPVLEI 421 SKLPTGAPVT FTATSTTLMV TQPTVTVSPT HQVPSEPFVG FTVTRAPLRP LDIGSTTLPP 481 PFNQHIITAG EPTWSSQQPH QPSEVPTQTT FIFPQTPETT TFAPTTGTQQ PVHKFVSPSV 541 PDENEEEEEE ETTEETEETF PTPSTMQVAT NGQFTTETAF VTSTIPSTTT DMEETDEDED 601 MTEEVTDSST QPSTTVFVQP TTTFTTEAPT TTMEEEEEMT TDQVEDIESE EIATTTTQTS 661 LPFWMTTTNK QVVPDSPTPM VIMPHPQPDE KMETSTEGVV DEESDEERTT ESNEEVVTKN 721 AEATTPSDIT HHHTSSGKQS SAAASWIIAI IALIVLGLLL LATSLFILRY IRQSRKLHGK 781 YNPAREEHNL SAAYAMPMSH IAKEERLI //