LOCUS CAA0059166.1 996 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans PID domain-containing protein protein.
ACCESSION BX284602-495
PROTEIN_ID CAA0059166.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 15279421)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="II"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="jip-1"
/locus_tag="CELE_F56D12.4"
/standard_name="F56D12.4d"
/note="Confirmed by transcript evidence"
intron_pos 33:0 (1/18)
intron_pos 104:0 (2/18)
intron_pos 157:2 (3/18)
intron_pos 210:1 (4/18)
intron_pos 265:1 (5/18)
intron_pos 301:1 (6/18)
intron_pos 366:0 (7/18)
intron_pos 465:2 (8/18)
intron_pos 531:1 (9/18)
intron_pos 624:2 (10/18)
intron_pos 666:1 (11/18)
intron_pos 755:1 (12/18)
intron_pos 782:2 (13/18)
intron_pos 808:1 (14/18)
intron_pos 844:1 (15/18)
intron_pos 914:0 (16/18)
intron_pos 940:2 (17/18)
intron_pos 973:2 (18/18)
BEGIN
1 MSAFECRKCD DFPIEENTED EDDDECPTVI RRSYSADWLH NDNSSGGDDD SEEDSDAEFL
61 VHPCLRSIIK SKSAYAVPRN SDDVAAAAAM KNNRIKPSKT SFEISLSKMM ESTSKSIAEE
121 AEYSVADLLP TLDEKWPDPE EENENLKSKR RKSNIMRYSP SLCDSDLSLN LHDKDSEDDE
181 DRILNRPSGC WSSPPNFFDE TFRGVSPMNQ KCWSAPDLED IVFKTCNVLY NYDVIGGGKI
241 PILRELIDED SIAIGYPVIE TPDNDPSVCS YRLPSSLGSA PSPSPPRPLS PVFGQPAPPQ
301 YRMHVSQSMH LPRRPDIEAF LADCQNDYTQ APPTFNIGSD LEDNITEEEE EDDEEDEEDV
361 RKTEEVWPEN ATANFCWSDG VRRVHRSATF QINRYLDDDV TDGGTVSPPL PRITVSRSAH
421 SQLYNLGAEE TEDDADGDGD DDDDVAENLN ENCSSGVSQL DETENQAYST RQAWMERGSL
481 VCLGSAHNCR NVIGGGGGHV EELQLPKNHH RLHPEILDNG VHANGIQSQY GSFSSLAQNE
541 PTSSLMRRSC TTDEFHRVRR RLPRRPDELG EPIDLLPQSK SMYERALQFG YATSSTSPPE
601 DYTSKEMKKR PPNLALQTTI DTIRQSSGME TRTINSTTGT NGIGSAGAAG KIDPCAHLET
661 PISPHIFQSV LPSPTPSSSG RRLPALPINS AALLRRIPMA SIPPNPPQKH QDHQLCFMDG
721 MADSMMERSS LGMEDSYYEE DGINGNRRRR QQRKYDSSGV SSCTTSDSQN PTHRVQSAFH
781 PRHPDELLLE IGDAVHVDRT ADDHWSYGTN LRTGQSGIFP ASIVCEIDLV EEICLGALPT
841 NATKILSGDR DTFYLTMLAS IEVAHHKGND VLTQAMNKVL SMYKNSEEII VPQTVLMEIS
901 FRGIHVIDKR RKNFFQCPMF DFFYSLQNIS FCGAHPKQLK YFGFITKHPL LPRFACHVFM
961 SKNTTQPIVE AIGRAFKRSY DEYMAFAHPT EDIYLE
//