LOCUS CAA0059123.1 1899 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans protein-tyrosine-phosphatase protein.
ACCESSION BX284602-3898
PROTEIN_ID CAA0059123.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 15279421)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="II"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="ptp-3"
/locus_tag="CELE_C09D8.1"
/standard_name="C09D8.1m"
/note="Confirmed by transcript evidence"
intron_pos 50:1 (1/25)
intron_pos 95:1 (2/25)
intron_pos 142:1 (3/25)
intron_pos 183:2 (4/25)
intron_pos 207:2 (5/25)
intron_pos 236:0 (6/25)
intron_pos 318:0 (7/25)
intron_pos 365:1 (8/25)
intron_pos 434:2 (9/25)
intron_pos 458:1 (10/25)
intron_pos 468:1 (11/25)
intron_pos 485:0 (12/25)
intron_pos 573:1 (13/25)
intron_pos 644:1 (14/25)
intron_pos 692:0 (15/25)
intron_pos 729:0 (16/25)
intron_pos 773:1 (17/25)
intron_pos 802:0 (18/25)
intron_pos 861:0 (19/25)
intron_pos 1033:0 (20/25)
intron_pos 1125:0 (21/25)
intron_pos 1158:0 (22/25)
intron_pos 1697:2 (23/25)
intron_pos 1782:0 (24/25)
intron_pos 1864:0 (25/25)
BEGIN
1 MQSSSILIYL LTVVGCSIAF LDNTLPLYLF KNLDTKETST VQTGLVTDKV RRVPPYFSYK
61 LERQYVVGVG GNINLTCVAV GYPMPRVFWK KTDLMVLDDP STAPIGKNVL TLTHVESTEN
121 FTCVAVSALG NIEATTTVIA KELPPPPVNI VVSSVTSESV VITWKPPKYN EAINKYVVNY
181 RLKSENKDDA ALFAKDSRAE DESDSERYSE GRSSRGKTME TLENSLVIDG LVAFQTYEFT
241 VRSAGPVGVG LESLPVEAQT KPSKPATAPV SPQARSLNRD SILVKWGPCE QPNGLITGYK
301 VYYTNDLVTT PIREWKQHDA KSDEFMTTIN GLEPDSRYFV RVIAQNSEGD SPLSTLVTVA
361 TRQGIPGQPP MLTVKALDSR RMQLTWDKPL YSSPVVGYTV RYNTSDGEKE LTLTSPHEKH
421 VVTGLHPDKY YYFRVAAYSD RGQGEFTEPM ISKTIASRGS EEESTAPVPS APRNFNAELT
481 SATSVKLTWD APAAANGALL GYYVYLDRMV NGEPVVEKGS KKRIVMIRDS SKRYFELDSL
541 DPNTEYSFRL NAFNRNGDGE FSERKSIITQ GIPPEAPEIV SVSLDRDEPP VVARIEWKMP
601 KMKPNETPIE KYNLWLRAQG YPDSYVKAKT VDGTDLSTTI SGLWMGVVYD VLLAAENREG
661 RSQNATETIA TPVGSPDGEP IDVQYEVMKG KIVVSWRPPS EEKRNGNITS YKAILSAMDA
721 TADRYEQPVP APSTSSTFEV NVRRAYLFKV AAATMKGIGP YSPVLTINPD PAALVGPPTN
781 VRVEATSNST AVVQWDFESQ KADSFVVKYM HEPGNRMDTE KWKQLPVVSI DKENPKRFAV
841 VSDLNAHKPY AFCVLAVKNN RQGPCSDPPT VLESVTPTYM VQNLRVLWKT SNSVQLTWEY
901 NGPRNVGFYV NHTGRKDYVN HELQEKTMST PGFGQDVDEK HREYLWTNLR PHMMYTIHVG
961 VRTLPPGARK YWPQEVVTIT DPTGPPFVDV PKLVDSSGTQ PGQQMIRLTP ATEEYGPISH
1021 YWIILVPANY STEDVVNLDP IELEKATAEK RAQLARSLSV SPSKKLKRKA SEVGDDSQSA
1081 SYHPKEKRAR RATVPGAYVT ARLSADRVKQ QYRNNQPFIV GDSQLYDGFT NYPLEHNLHY
1141 RLMMRAFAKN DVRTKDSFEQ RAPMSEKLSR MYSDSVLTEP FTIKSALRGA SQKSSPWVGA
1201 CIAFLVLFSI VGMLICWWLR CNKKSAGRHP RHGSITKVAL TGNIMNGGGG IPGETSKLLS
1261 TSNEYGRQIM NPYEQMNGNH HMESSMDLYP LPTSHSRSNG YAPVPVAIPS LPNNGNNMTT
1321 VSHPAVPIAE LANHIERLRM NNNAGFQSEF ESIETGQHFT WEHSSADMNK HKNRYANVAA
1381 YDHSRVVLSN VEGYPGMDYI NANYVDGYDK PRSYIATQGP LPETFSDFWR MVWEEQSVTI
1441 VMLTNLEERS RVKCDQYWPS RGTATYGDIE VTLLESVHLA HYTMRTMRLK MVGEPEVREI
1501 KHLQYTAWPD HGVPDHPTPF LIFLKRVKTL NPNDAGPIIS HCSAGIGRTG AFIVIDCMLE
1561 RLRYDNTVDI YGCVTALRAQ RSYMVQTEEQ YIFIHDAVLD AVNSGSTEVP ASRLHQHLHI
1621 LSQPSADQLS GIDMEFRHLT TLKWTSNRCT VANLPVNRPK NRMLSAVPYD SNRVIMRLLP
1681 GADGSDYINA SWIDGYKERG AYIATQAPTN ETAADFWRAI WEHNSPIIAM LVRTNERGQE
1741 QCSDYWPLET GVQVGMLVVE PMAEYDMKHY HLREFRISDI NTREVRTVRQ FHFMEWPDVG
1801 KPHTADHFLD FVTQVHNTYA QFGCTGPITV HCCSGAGRTA VFIALSIILD RMRAEHVVDV
1861 FTTVKLLRTE RQNMIQEPEQ YHFLYLAAYE YLAAYDNFS
//