LOCUS BBL44373.1 1407 aa PRT BCT 11-OCT-2019
DEFINITION Escherichia coli O111:H- DNA-directed RNA polymerase subunit
beta' protein.
ACCESSION AP019761-4654
PROTEIN_ID BBL44373.1
SOURCE Escherichia coli O111:H-
ORGANISM Escherichia coli O111:H-
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
Enterobacteriaceae; Escherichia.
REFERENCE 1 (bases 1 to 5302257)
AUTHORS Sekizuka,T., Iyoda,S., Isobe,J., Mitobe,J., Lee,K., Sata,T.,
Kuroda,M., Ohnishi,M. and Watahiki,M.
TITLE Direct Submission
JOURNAL Submitted (21-JUN-2019) to the DDBJ/EMBL/GenBank databases.
Contact:Tsuyoshi Sekizuka
National Institute of Infectious Diseases, Pathogen Genomics
Center; 1-23-1 Toyama, Shinjuku-ku, Tokyo 162-8640, Japan
REFERENCE 2
AUTHORS Sekizuka,T., Lee,K., Kimata,K., Isobe,J., Kuroda,M., Iyoda,S.,
Ohnishi,M., Sata,T. and Watahiki,M.
TITLE Complete Genome Sequence of an Enterohemorrhagic Escherichia coli
O111:H8 Strain Recovered from a Large Outbreak in Japan Associated
with Consumption of Raw Beef
JOURNAL Microbiol Resour Announc 8, e00882-19 (2019)
REMARK Publication Status: Online-Only
DOI:10.1128/MRA.00882-19
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: HGAP Assembly v. 3.0; Pilon v. 1.18; A5
MiSeq v. 20140513
Genome Coverage :: 200x
Sequencing Technology :: MiSeq; PacBio RSII
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /collection_date="2011-05-01"
/country="Japan"
/db_xref="taxon:168927"
/host="Homo sapiens"
/isolation_source="bloody diarrhea"
/mol_type="genomic DNA"
/note="Enterohemorrhagic Escherichia coli ; EHEC"
/organism="Escherichia coli O111:H-"
/serotype="O111:H-"
/strain="110512"
protein /gene="rpoC"
/locus_tag="EC110512_C46540"
/transl_table=11
BEGIN
1 MKDLLKFLKA QTKTEEFDAI KIALASPDMI RSWSFGEVKK PETINYRTFK PERDGLFCAR
61 IFGPVKDYEC LCGKYKRLKH RGVICEKCGV EVTQTKVRRE RMGHIELASP TAHIWFLKSL
121 PSRIGLLLDM PLRDIERVLY FESYVVIEGG MTNLERQQIL TEEQYLDALE EFGDEFDAKM
181 GAEAIQALLK SMDLEQECEQ LREELNETNS ETKRKKLTKR IKLLEAFVQS GNKPEWMILT
241 VLPVLPPDLR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLDLAAPDI IVRNEKRMLQ
301 EAVDALLDNG RRGRAITGSN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS GRSVITVGPY
361 LRLHQCGLPK KMALELFKPF IYGKLELRGL ATTIKAAKKM VEREEAVVWD ILDEVIREHP
421 VLLNRAPTLH RLGIQAFEPV LIEGKAIQLH PLVCAAYNAD FDGDQMAVHV PLTLEAQLEA
481 RALMMSTNNI LSPANGEPII VPSQDVVLGL YYMTRDCVNA KGEGMVLTGP KEAERLYRSG
541 LASLHARVKV RITEYEKDAN GELVAKTSLK DTTVGRAILW MIVPKGLPYS IVNQALGKKA
601 ISKMLNTCYR ILGLKPTVIF ADQIMYTGFA YAARSGASVG IDDMVIPEKK HEIISEAEAE
661 VAEIQEQFQS GLVTAGERYN KVIDIWAAAN DRVSKAMMDN LQTETVINRD GQEEKQVSFN
721 SIYMMADSGA RGSAAQIRQL AGMRGLMAKP DGSIIETPIT ANFREGLNVL QYFISTHGAR
781 KGLADTALKT ANSGYLTRRL VDVAQDLVVT EDDCGTHEGI MMTPVIEGGD VKEPLRDRVL
841 GRVTAEDVLK PGTADILVPR NTLLHEQWCD LLEENSVDAV IVRSVVSCDT DFGVCAHCYG
901 RDLARGHIIN KGEAIGVIAA QSIGEPGTQL TMRTFHIGGA ASRAAAESSI QVKNKGSIKL
961 SNVKSVVNSS GKLVITSRNT ELKLIDEFGR TKESYKVPYG AVLAKGDGEQ VAGGETVANW
1021 DPHTMPVITE VSGFVRFTDM IDGQTITRQT DELTGLSSLV VLDSAERTAG GKDLRPALKI
1081 VDAQGNDVLI PGTDMPAQYF LPGKAIVQLE DGVQISSGDT LARIPQESGG TKDITGGLPR
1141 VADLFEARRP KEPAILAEIS GIVSFGKETK GKRRLVITPV DGSDPYEEMI PKWRQLNVFE
1201 GERVERGDVI SDGPEAPHDI LRLRGVHAVT RYIVNEVQDV YRLQGVKIND KHIEVIVRQM
1261 LRKATIVNAG SSDFLEGEQV EYSRVKIANR ELEANGKVGA TYSRDLLGIT KASLATESFI
1321 SAASFQETTR VLTEAAVAGK RDELRGLKEN VIVGRLIPAG TGYAYHQDRM RRRAAGEAPA
1381 APQVTAEDAS ASLAELLNAG LGGSDNE
//