LOCUS BBK55617.1 2104 aa PRT BCT 04-APR-2020 DEFINITION Escherichia coli O145:H28 DEAD/DEAH box helicase protein. ACCESSION AP019706-5118 PROTEIN_ID BBK55617.1 SOURCE Escherichia coli O145:H28 ORGANISM Escherichia coli O145:H28 Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia. REFERENCE 1 (bases 1 to 5488534) AUTHORS Nakamura,K., Murase,K., Toyoda,A., Itoh,T., Yoshino,S., Lee,K., Iyoda,S., Ohnishi,M., Ooka,T., Ogura,Y. and Hayashi,T. TITLE Direct Submission JOURNAL Submitted (04-JUN-2019) to the DDBJ/EMBL/GenBank databases. Contact:Keiji Nakamura Faculty of Medical Sciences, Kyushu University; Higashi-ku Maidashi 3-1-1, Fukuoka, Fukuoka 812-8582, Japan REFERENCE 2 AUTHORS Nakamura,K., Murase,K., Sato,M.P., Toyoda,A., Itoh,T., Mainil,J.G., Pierard,D., Yoshino,S., Kimata,K., Isobe,J., Seto,K., Etoh,Y., Narimatsu,H., Saito,S., Yatsuyanagi,J., Lee,K., Iyoda,S., Ohnishi,M., Ooka,T., Gotoh,Y., Ogura,Y. and Hayashi,T. TITLE Differential dynamics and impacts of prophages and plasmids on the pangenome and virulence factor repertoires of Shiga toxin-producing Escherichia coli O145:H28 JOURNAL Microb Genom 6, e000323 (2020) REMARK Publication Status: Online-Only DOI:10.1099/mgen.0.000323 COMMENT ##Genome-Assembly-Data-START## Assembly Method :: Canu v. 1.5 Genome Coverage :: 150x Sequencing Technology :: Illumina MiSeq; PacBio RS II ##Genome-Assembly-Data-END## FEATURES Qualifiers source /collection_date="2011" /country="Japan:Fukushima" /db_xref="taxon:1078034" /isolation_source="human feces" /mol_type="genomic DNA" /organism="Escherichia coli O145:H28" /serovar="O145:H28" /strain="112648" protein /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:INSD:BAB38683.1" /locus_tag="EC112648_5118" /transl_table=11 BEGIN 1 MDVQQLHYAP LLNQLHQRAV RSVVSQLALR SKSLTHYLES QYFQPPGQEG SLLADPVFES 61 TFGWMPADET MEDLRDKLIS SPLVDALSKA PVPFRHQLTA WRTILEDKKS LLVSSGTGSG 121 KTECFMVPVL EDLIRQQKST RQSLTGTQAI FLYPLNALIN SQQERLREWT RGFKGKIRFA 181 LYNGETRHTK YEIQEDQLKV PEQALSREAI YEAPPSIMVT NTTMLEYMLI RRKDAPIIEK 241 SQGMLKYIVL DEAHSYIGSQ AAELALLLRR VMQAFNVGPG TDKPVQIIAT SATIGEDSPE 301 GNKELAKFVA DLAGVTERDV KVVRGYRQIP RVSESLIRHE YPTSLTSLKS LSPQDLYQQL 361 CHYRVAQQLR QALTHPGRQA VRLSELLNVA RRTWPDINHR ELLQLLDLMA RSREGELAFT 421 PLRMHGFIRT LAGLWACSNK QCSHKAHELN QSDWPFGQVW FEQRQYCDCG APVFEVLRCS 481 GCGSAYLSAK EEMRGDGTNW LVAQPAAAEV DEFALDVDVY SEDEDNDELD NNSQFDRLIA 541 SDGEKYIISL EETTAGKIDS EAQKHYEINL LRPESRGEGR NNSFACVCCG DTQRKNNPLF 601 RPLRLGAPFF LNEIIPTLLE FSPLPQTREE QLGPFNGRRL LTFTDSRQGT ARISARLQQD 661 ADKATLRALC YQELANITEP SAKLSPAHCA LLEKVISQFS VLPLKNSIDA LKKAMAANEE 721 LSPTDIQALK IIEPMVSSLS TEHAEAMQIL QANSGNQQKK TMSWQTLSEQ LVGSVDLADR 781 MRGSFKELSG LDLTKQQFAD FCLYSEFGRR PKNAWTLESL GLVAIHYPFI DKVTTCPQDW 841 KTLLPDPDKQ LAEWRNLLKI TLDFFIRENS AVFYENEQYP RWMGARFPVK MLQGPDKKNK 901 GQKRDQLWPQ IRDRHYNRVI KLLIAVFPAI QPEQAHWKSL VNHLMIEVWD AIRPCLRQFE 961 SGYQLDIKQQ AEFYSPKQVW RCPYTRRALD VTLLGYSPYL PGSKEIAPEK AVLIEMPELP 1021 VRHWRLSGGG EIAREERLEW LESNALIQHA REEGLWSTRS DRLALKDSWY RLEEHSAQRT 1081 PEQNQFNEKQ FKSGKVNVLN CSTTMEMGVD IGGMSLVAMN NVPPAPANYL QRAGRAGRRG 1141 ESASAAITLC KNTAHGMEVF KAPLWAFNTT ASAPRVRFGS SSIVQRHVNA QVLGLFLRAE 1201 VPDATKLSCK WFFEGDESQC LRFLHWLNHQ ADELADKLKR LTQGTVLMSL TATQLLTRTQ 1261 AMMQQVDIRW RSQLAILLEN IEALKADNSA WEETPAGKAI AYQLRDYRGA YLFSKLISEA 1321 FLPGHGFPVG VVNFNYLTAD ELEKRRAIKA TQADPNEGGE SFSRRIEKLP SRDLPTALRE 1381 YAPGADVVLG GKVYRSSGIM LGKVLASGQE LSGDHHIPWF WHCRKCGAGA TSTTHPVECS 1441 HCKADIQQLD VKRYLQPVGF ATDIRYQAHN DVSMPAQLPW KDPRVLVPSS VWVSLPDAGL 1501 GRYRFSHSGE LFHFSEGEFG HGYAICLSCG RAESQTQPQR TPENLKNPER ENTHYLLRGG 1561 SNDRQGSNKL CHGHVHKDLW LGYSSRTDMV ELQLNDDNGL LIRDEVAARS LAVALREGLA 1621 HKLGIENTEL GVTTQQARDI NGYTGYSIFI YDNNAGGAGY AVQLIDHWAD VFNYARKLLD 1681 CSCDKFCHHC LLSYDSQHYV NRLDRHHALT LLTNVRLQRL NLAPEYQYFG DGSRVETNPL 1741 SLRIAQCLNS EIYDSCSLVL AGPQEQWDFA QWPLFKELLQ FASSGGNVEL LVATPLENLT 1801 DSSRHQLSAL AAMPGGRLQV KSIATAQLMQ GKGRWLAQVT RKGQSQQWAA DDSATVAPGE 1861 LWGQSASSPV VTLKGTSGKT FSGQTLSAED LLPALPTGAV RINLCEQLDG PLEGFGSRFW 1921 SLVTQQHAGW KQAFTRHKEI THVEYSDRYL NSPFTARLLG EILTELVEQG MAERASLTVC 1981 VKKLDYNSRQ HDALYNAWLN EEDRQQVVTT LLEEGYLGPA WPGAISWLTG DNQSTEHGRE 2041 LTVTFSDGSQ HYVLLDMGLS YWRCIEDTFF DFALRVPQQV ERLANTRARA VAPGNDLRSY 2101 IIAG //