LOCUS BBF57735.1 869 aa PRT BCT 27-JUL-2018 DEFINITION Escherichia coli outer membrane usher protein FimD protein. ACCESSION AP018808-549 PROTEIN_ID BBF57735.1 SOURCE Escherichia coli ORGANISM Escherichia coli Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia. REFERENCE 1 (bases 1 to 5678205) AUTHORS Kusumoto,M. and Akiba,M. TITLE Direct Submission JOURNAL Submitted (20-JUL-2018) to the DDBJ/EMBL/GenBank databases. Contact:Masahiro Kusumoto National Institute of Animal Health; Chuzan 2702, Kagoshima, Kagoshima 891-0105, Japan REFERENCE 2 AUTHORS Kusumoto,M., Misumi,W., Ogura,Y., Hayashi,T. and Akiba,M. TITLE Genomic analysis of colistin resistant EHEC isolated from cattle in Japan. JOURNAL Unpublished (2018) COMMENT Annotated using prokka 1.11 from http://www.vicbioinformatics.com. Annotated at DFAST https://dfast.nig.ac.jp/ ##Genome-Assembly-Data-START## Assembly Method :: RS HGAP Assembly v. 3.0 Genome Coverage :: 161x Sequencing Technology :: PacBio RSII ##Genome-Assembly-Data-END## FEATURES Qualifiers source /collection_date="2014" /country="Japan" /db_xref="taxon:562" /host="Bos taurus" /isolation_source="feces" /mol_type="genomic DNA" /organism="Escherichia coli" /strain="E2865" protein /gene="fimD_1" /inference="ab initio prediction:Prodigal:2.6" /inference="similar to AA sequence:INSD:BAB34017.1" /locus_tag="E2865_00558" /transl_table=11 BEGIN 1 MKIPTTTDIP QRYTWCLAGI CYSSLAILPS FLSYAESYFN PAFLLENGTS VADLSRFERG 61 NHQPAGVYRV DLWRNDEFIG SQDIVFESTT ENTGDKSGGL MPCFNQVLLE RISLNSSAFP 121 ELAQQQNNKC INLLKAVPDA TINFDFAAMR LNITIPQIAL LSSAHGYIPP EEWDEGIPAL 181 LLNYNFTGNR GNGNDSYFFS ELSGINIGPW RLRNNGSWNY FRGNGYHSEQ WNNIGTWVQR 241 AIIPLKSELV MGDGNTGSDI FDGVGFRGIR LYSSDNMYPD SQQGFAPTVR GIARTAAQLT 301 IRQNGFIIYQ SYVSPGAFEI TDLHPTSSNG DLDVTIDERD GNQQNYTIPY STVPILQREG 361 RFKFDLTAGD FRSGNSQQSS PFFFQGTALG GLPQEFTAYG GTQLSANYTA FLLGLGRNLG 421 NWGTVSLDVT HARSQLADDS RHEGDSIRFL YAKSMNTFGT NFQLMGYRYS TQGFYTLDDV 481 AYRRMEGYEY DYDYDGEHRD EPIIVNYHNL RFSRKDRLQL NISQSLNDFG SLYISGTHQK 541 YWNTSDSDTW YQVGYTSSWV GISYSLSFSW NESVGIPDNE RIVGLNVSVP FNVLTKRRYT 601 RENALDRAYA SFNANRNSNG QNSWLAGVGG TLLEGHNLSY HVSQGDTSNN GYTGSATANW 661 QAAYGTLGVG YNYDRDQHDV NWQLSGGVVG HENGITLSQP LGDTNVLIKA PGAGGVRIEN 721 QTGILTDWRG YAVMPYATVY RYNRIALDTN TMGNSIDVEK NISSVVPTQG ALVRANFDTR 781 IGVRALITVT QGRKPVPFGS LVRENSTGIT SMVGDDGQVY LSGAPLSGEL LVQWGDGANS 841 RCIAHYVLPK QSLQQAVTVI SAVCTHPGS //