LOCUS       BBE14550.1              1401 aa    PRT              BCT 03-AUG-2018
DEFINITION  Vibrio cholerae RNA polymerase beta prime subunit protein.
ACCESSION   AP018677-3372
PROTEIN_ID  BBE14550.1
SOURCE      Vibrio cholerae
  ORGANISM  Vibrio cholerae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales;
            Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 4057041)
  AUTHORS   Yamamoto,S. and Lee,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2018) to the DDBJ/EMBL/GenBank databases.
            Contact:Shouji Yamamoto
            National Institute of Infectious Diseases; Toyama 1-23-1, Tokyo
            162-8640, Japan
REFERENCE   2
  AUTHORS   Yamamoto,S., Lee,K., Morita,M., Arakawa,E., Izumiya,H. and
            Ohnishi,M.
  TITLE     Single Circular Chromosome Identified from the Genome Sequence of
            the Vibrio cholerae O1 bv. El Tor Ogawa Strain V060002
  JOURNAL   Genome Announc 6, e00564-18 (2018)
  REMARK    Publication Status: Online-Only
            DOI:10.1128/genomeA.00564-18
COMMENT     Annotated using prokka 1.11 from http://www.vicbioinformatics.com.
            Annotated at DFAST https://dfast.nig.ac.jp/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: HGAP v. 3
            Genome Coverage       :: 196.55x
            Sequencing Technology :: PacBio RS II
            ##Genome-Assembly-Data-END##
FEATURES             Qualifiers
     source          /db_xref="taxon:666"
                     /host="Homo sapiens"
                     /mol_type="genomic DNA"
                     /organism="Vibrio cholerae"
                     /strain="V060002"
     protein         /gene="rpoC"
                     /inference="ab initio prediction:Prodigal:2.6"
                     /inference="similar to AA sequence:INSD:AAC76962.1"
                     /locus_tag="V060002_03477"
                     /transl_table=11
BEGIN
        1 MKDLLNFLKA QHKTEEFDAI KIGLASPDMI RSWSFGEVKK PETINYRTFK PERDGLFCAR
       61 IFGPVKDYEC LCGKYKRLKH RGVICEKCGV EVTQTKVRRD RMGHIELASP VAHIWFLKSL
      121 PSRIGLLMDM PLRDIERVLY FEMYVVTEPG MTDLERGQML TEEEYLDRLE EWGDEFTAKM
      181 GAEAIKDLLA SMDLPAEAEQ MREELDTTNS ETKRKKLTKR LKLVEAFVAS GNKPEWMILT
      241 VLPVLPPDLR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLELAAPDI IVRNEKRMLQ
      301 ESVDALLDNG RRGRAITGSN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS GRSVITVGPY
      361 LRLHQCGLPK KMALELFKPF IYSKLETRGL ATTIKAAKKM VEREEAVVWD ILDEVIREHP
      421 VLLNRAPTLH RLGIQAFEPV LIEGKAIQLH PLVCAAYNAD FDGDQMAVHV PLTLEAQLEA
      481 RTLMMSTNNI LSPASGDPII VPSQDVVLGL YYMTREKINA KGEGMYLTGP AEAEKAYRTK
      541 TAELHARVKV RITETIKHEN GKLTTETKMI DTTVGRAMLW QIVPKGLPYS LVNQKLGKKQ
      601 ISNLLNEAYR KLGLKDTVIF ADQIMYTGFA YAALSGVSVG IDDMVVPAAK YTEIAEAEEE
      661 VREIQEQFQS GLVTAGERYN KVIDIWASTN DRVAKAMMEN LSSEQVINRQ GEQEKQESFN
      721 SIYMMADSGA RGSAAQIRQL AGMRGLMARP DGSIIETPIT ANFKEGLNVL QYFISTHGAR
      781 KGLADTALKT ANSGYLTRRL VDVAQDVVVT EHDCGTLEGV VMTPHIEGGD VKVALTELAL
      841 GRVVSEDILK PGTDEVLIPR NTLLDEKWCK VINDNSVDQI KVRSVVTCDS DFGCCAQCYG
      901 RDLARGHLVN QGEAVGVIAA QSIGEPGTQL TMRTFHIGGA ASTAAAENSI QAKNNGSVKL
      961 HNAKFVTNKD GKLVITSRAS ELTIIDEFGR TKEKHKLPYG SMLSKADGDA VAAGETVANW
     1021 EAHTMPIITE VAGRVQFVDM IDGVTVSRQT DDLTGLSSSE VTEAAARPAA GKDMRPAIKL
     1081 VDANGKDVLI PGTDMPAQYF LPGKAIVNLD DGAEVNVGDT LARIPQKSGG NKDITGGLPR
     1141 VADLFEARKP KEPAILAEHS GTVSFGKETK GKRRLIITRD SGDTYEEMIP KHRQLNVFEG
     1201 ERIERGDVIA DGPESPHDIL RLRGIHAVTT YIANEVQEVY RLQGVKINDK HIETIVRQML
     1261 RKCTITFAGD SEFLPGETVE YSQVKIANRK LVEEGKEPAR FERELLGITK ASLATESFIS
     1321 AASFQETTRV LTEAAVSGKR DDLRGLKENV IVGRLIPAGT GFAYHQDRQA KRAQEQQGPS
     1381 AEQATDNLAA LLNAGFSSDD E
//