LOCUS BAS36257.1 511 aa PRT BCT 15-SEP-2015 DEFINITION Klebsiella pneumoniae cyclic diguanylate phosphodiesterase (EAL) domain-containing protein protein. ACCESSION AP014950-3397 PROTEIN_ID BAS36257.1 SOURCE Klebsiella pneumoniae ORGANISM Klebsiella pneumoniae Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella. REFERENCE 1 (bases 1 to 5520319) AUTHORS Iwase,T., Ogura,Y., Ishiwata,K., Hayashi,T., Yoneda,M. and Mizunoe,Y. TITLE Direct Submission JOURNAL Submitted (14-SEP-2015) to the DDBJ/EMBL/GenBank databases. Contact:Tadayuki Iwase Jikei University School of Medicine, Bacteriology; 3-25-8 Nishi-shinbashi, Minato-ku, Tokyo 105-8461, Japan REFERENCE 2 AUTHORS Iwase,T., Ogura,Y., Ishiwata,K., Hayashi,T., Yoneda,M. and Mizunoe,Y. TITLE Complete genome sequence of Klebsiella pneumoniae YH43 JOURNAL Unpublished (2015) COMMENT The genome sequence of K. pneumoniae strain YH43 was determined using 454 GS FLX Titanium system. A total of 524,416 single-end reads (218 Mb) and 142,440 8-kb paired-end reads (46 Mb) were assembled with GS Assembler software version 2.6 into one scaffold containing 58 gaps. The finishing was first performed by in silico analysis using GenoFinisher software (http://www.ige.tohoku.ac.jp/joho/gf_e/) and then remaining gaps were closed by sequencing of gap-spanning PCR products using an ABI3130xl DNA sequencer. To correct sequence error by resequencing of YH43 genome, a paired-end library of YH43 was constructed using the TruSeq DNA Sample Prep kit and sequenced by the Illumina MiSeq platform (2x150 bp). The mapping of obtained 2,085,021 reads (626 Mb) to YH43 genome sequence and the SNPs-calling were performed using BWAand SAMtools, respectively. Total 38 in-dels were corrected by the resequencing. The gene identification and annotation were conducted by the Microbial Genome Annotation Pipeline (MiGAP). ##Genome-Assembly-Data-START## Assembly Method :: GS Assembler software v. 2.6 Genome Coverage :: 40x Sequencing Technolog :: 454 GS FLX; Illumina MiSeq ##Genome-Assembly-Data-END## FEATURES Qualifiers source /db_xref="taxon:573" /mol_type="genomic DNA" /organism="Klebsiella pneumoniae" /strain="YH43" protein /locus_tag="KPYH43_c3397" /transl_table=11 BEGIN 1 MKKTKVRNAW ISFSLALVVF LAGVFVINWQ LWHSDQATHA AAARQAAKKI AVILDEARAA 61 TVTAMNVSRR GCSVQGQFQL GTEAALQPHL RTIVLVKDGL VWCSSLPGNR VLTLHPESLP 121 DELLQLLPAR MMVNKRPVLI YHTRSAQVRV IVSISDIHLR DALYSDEDNA GLALSVNHQM 181 IARYGDVEPL NAGPHQGIFS SPDYPFRIIY PESPFFSPGR LFRNGFGLLI FIFSVALLFY 241 FLLRKYLNAY TSEEENLRYA IAQGDIVPYY QPVVNGKTGE IYGVEILARW KNSTAQWRSP 301 AEFIPLAERT GLIIPLTRSL MAQVAAQMRP IFSKLPDGFH IGLNISASHI NDPTFIDDCL 361 HYQRGFEGKA VKLILEITEQ EPLLLNGAVV DKLNTLHSRG FSIALDDFGT GYSGLSYLHE 421 LVFDYIKIDQ SFVGRVTGET PSSKLLDCVI EMARTLSLRI IAEGVETQAQ LDYLNRQNIH 481 LLQGYYFWKP MPYVALVMLL LSKPKARIVE E //