LOCUS BAS33984.1 962 aa PRT BCT 15-SEP-2015 DEFINITION Klebsiella pneumoniae peptidoglycan binding domain/papain familycysteine protease protein. ACCESSION AP014950-1124 PROTEIN_ID BAS33984.1 SOURCE Klebsiella pneumoniae ORGANISM Klebsiella pneumoniae Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella. REFERENCE 1 (bases 1 to 5520319) AUTHORS Iwase,T., Ogura,Y., Ishiwata,K., Hayashi,T., Yoneda,M. and Mizunoe,Y. TITLE Direct Submission JOURNAL Submitted (14-SEP-2015) to the DDBJ/EMBL/GenBank databases. Contact:Tadayuki Iwase Jikei University School of Medicine, Bacteriology; 3-25-8 Nishi-shinbashi, Minato-ku, Tokyo 105-8461, Japan REFERENCE 2 AUTHORS Iwase,T., Ogura,Y., Ishiwata,K., Hayashi,T., Yoneda,M. and Mizunoe,Y. TITLE Complete genome sequence of Klebsiella pneumoniae YH43 JOURNAL Unpublished (2015) COMMENT The genome sequence of K. pneumoniae strain YH43 was determined using 454 GS FLX Titanium system. A total of 524,416 single-end reads (218 Mb) and 142,440 8-kb paired-end reads (46 Mb) were assembled with GS Assembler software version 2.6 into one scaffold containing 58 gaps. The finishing was first performed by in silico analysis using GenoFinisher software (http://www.ige.tohoku.ac.jp/joho/gf_e/) and then remaining gaps were closed by sequencing of gap-spanning PCR products using an ABI3130xl DNA sequencer. To correct sequence error by resequencing of YH43 genome, a paired-end library of YH43 was constructed using the TruSeq DNA Sample Prep kit and sequenced by the Illumina MiSeq platform (2x150 bp). The mapping of obtained 2,085,021 reads (626 Mb) to YH43 genome sequence and the SNPs-calling were performed using BWAand SAMtools, respectively. Total 38 in-dels were corrected by the resequencing. The gene identification and annotation were conducted by the Microbial Genome Annotation Pipeline (MiGAP). ##Genome-Assembly-Data-START## Assembly Method :: GS Assembler software v. 2.6 Genome Coverage :: 40x Sequencing Technolog :: 454 GS FLX; Illumina MiSeq ##Genome-Assembly-Data-END## FEATURES Qualifiers source /db_xref="taxon:573" /mol_type="genomic DNA" /organism="Klebsiella pneumoniae" /strain="YH43" protein /locus_tag="KPYH43_c1124" /transl_table=11 BEGIN 1 MVKLLLQGSS GPEVVQLRKR LAKTLGADAN MFALSSNSDT FDATLASAVR HWQSHIGIIA 61 DGVVGPYCQS LLALITLPAF ALRADEVQHL FPATKPSNVL RYLPYVAAAL TSEGLTTIPL 121 ILAALGTIRA ETEGFVPISE YPSQFNTLPG LPAFSAYDAG TDKGKNLGNI TPGDGARFRG 181 RGFVQLTGRS NYQKYASRIG VDIIGSPDLA NAPEVAAVLL AMFLGDRREA LTAALTATPP 241 DYRKARRLVN GGAHGLDSFK KVFTLAAVLP AVMQQTSQIQ GAGAGRGARQ QAGAAAIAAP 301 AEGPVLNASK DPLDLRDRTY TPPPVSLPDR FPIDKDIATL LTVYTQAQLI LDQGREGACT 361 GFGLACVVNY LRWRKAGFPK KLDSVSPRML YNFARRYDEY AGEDYDGSSC RGALKGWFHH 421 GVCLESDWPY RVQENIPPQY GYAERAVNTT LGVYYRIDIK NITDMQAAIH DVGAIYVSAF 481 THEGWQTVPT AKKAPTNHDS LAVIAFNGKP TKTGGHAFAL VGFNRDGFIV QNSWGTEWGC 541 GGFAVLSYAD WLTNAMDAWV AALGVPGVVP GQLATGSPAL ATQAAAGNHP QWWDETTAYQ 601 HSIVIGNDGR VDRYLTQDEM TRTLMYQGCV LPDHWFRLQH AETKRLVIYA HGGLNNEAGS 661 IARARAMGRY FTGNDCYPLF LVWKTGILES IGDIFSDHFR REPSRAGGVR EALTEASDLL 721 IEETIGRPAA KPLWSEMKEN AEFSCVSGRA GDLLVTALQK LVETWGKALE IHIIGHSAGS 781 IILGHFVDLL SSRGLGDALK SAHLYAPACT VQFANRHYAP HELLMKRMYL HILSDRIERA 841 DNVAAIYRKS LLYFVSNALE GDRRTPLLGM DKIRDKNYSG WDGSSSTGEA LRNWRHAAAE 901 AGLEKRGRTN IIDIDKVPGG PGVMIDASHG SFDNNIDVIS LTLQRIVENS QLNLLVDDLR 961 GF //