LOCUS BAS33175.1 901 aa PRT BCT 15-SEP-2015 DEFINITION Klebsiella pneumoniae HTH-type transcriptional regulator malT protein. ACCESSION AP014950-315 PROTEIN_ID BAS33175.1 SOURCE Klebsiella pneumoniae ORGANISM Klebsiella pneumoniae Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella. REFERENCE 1 (bases 1 to 5520319) AUTHORS Iwase,T., Ogura,Y., Ishiwata,K., Hayashi,T., Yoneda,M. and Mizunoe,Y. TITLE Direct Submission JOURNAL Submitted (14-SEP-2015) to the DDBJ/EMBL/GenBank databases. Contact:Tadayuki Iwase Jikei University School of Medicine, Bacteriology; 3-25-8 Nishi-shinbashi, Minato-ku, Tokyo 105-8461, Japan REFERENCE 2 AUTHORS Iwase,T., Ogura,Y., Ishiwata,K., Hayashi,T., Yoneda,M. and Mizunoe,Y. TITLE Complete genome sequence of Klebsiella pneumoniae YH43 JOURNAL Unpublished (2015) COMMENT The genome sequence of K. pneumoniae strain YH43 was determined using 454 GS FLX Titanium system. A total of 524,416 single-end reads (218 Mb) and 142,440 8-kb paired-end reads (46 Mb) were assembled with GS Assembler software version 2.6 into one scaffold containing 58 gaps. The finishing was first performed by in silico analysis using GenoFinisher software (http://www.ige.tohoku.ac.jp/joho/gf_e/) and then remaining gaps were closed by sequencing of gap-spanning PCR products using an ABI3130xl DNA sequencer. To correct sequence error by resequencing of YH43 genome, a paired-end library of YH43 was constructed using the TruSeq DNA Sample Prep kit and sequenced by the Illumina MiSeq platform (2x150 bp). The mapping of obtained 2,085,021 reads (626 Mb) to YH43 genome sequence and the SNPs-calling were performed using BWAand SAMtools, respectively. Total 38 in-dels were corrected by the resequencing. The gene identification and annotation were conducted by the Microbial Genome Annotation Pipeline (MiGAP). ##Genome-Assembly-Data-START## Assembly Method :: GS Assembler software v. 2.6 Genome Coverage :: 40x Sequencing Technolog :: 454 GS FLX; Illumina MiSeq ##Genome-Assembly-Data-END## FEATURES Qualifiers source /db_xref="taxon:573" /mol_type="genomic DNA" /organism="Klebsiella pneumoniae" /strain="YH43" protein /locus_tag="KPYH43_c0315" /transl_table=11 BEGIN 1 MLIPSKLSRP VRLEHTVVRE RLLAKLSGAN NYRLVLITSP AGYGKTTLIS QWAAGKNDLG 61 WFSLDEGDNQ QERFASYLIA AIQQATGNHC AASEAMVQKR QYASLSSLFA QLFIELADWQ 121 RPLYLVIDDY HLINNPVIHD AMRFFLRHQP ENMTLVVLSR NLPQLGIANL RVRDQLLEIG 181 SQQLAFTHQE AKQFFDCRLT SPIEADDSSR LCDDVAGWAT ALQLIALSAR QNNSSAQHSA 241 RRLAGINASH LSDYLVDEVL DNVDARTRSF LLKSSLLRSM NDALIVRVTG EENGQMQLEE 301 IERQGLFLQR MDDSGEWFRY HPLFGSFLRQ RCQWELAVEL PEIHRAAAES WMAQGFPSEA 361 IHHALAAGDA KMLRDILLNH AWGMFNHSEL GLLEQSLSAL PWSNLLENPR LILLQAWLMQ 421 SQHRYSEVNT LLARAEQEMS VEMDTAMHGD FNALRAQVAI NDGDQDEAER LSMVALEELP 481 LANYYSRIVA TSVHGEVLHC KGKLTKSLAV MQQTEQMARR HDVWHYALWS IIQQSEILFA 541 QGFLQAAWES QEKAFQLVRE QHLEQLPMHE FLLRIRSQLL WAWARLDEAE ACARQGMDVL 601 STYQPQQQLQ CLALMVQCSL ARGDLDNARS HLNRLENLLG NGHYHSDWVS NADKVRVIYW 661 QMTGDKTAAA NWLRQTPKPE FANNHFLQSQ WRNIARAQIL LGDFEPAEMV LEELNENARS 721 LRLMSDLNRN LLLLNQLYWQ AGRKSEAQKA LLEALTLANR TGFINHFVIE GEAMAQQLRQ 781 LIQLNTLPEL EQHRAQRILR DINQHHRHKF AHFDEGFVER LLNHPEVPEL IRTSPLTQRE 841 WQVLGLIYSG YSNEQIAGEL DVAATTIKTH IRNLYQKLGV AHRQDAVQHA QQLLKMMGYG 901 V //