LOCUS BAD72540.1 150 aa PRT PLN 16-FEB-2008
DEFINITION Oryza sativa Japonica Group hypothetical protein protein.
ACCESSION AP007226-9
PROTEIN_ID BAD72540.1
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 136159)
AUTHORS Sasaki,T., Matsumoto,T. and Fujisawa,M.
TITLE Direct Submission
JOURNAL Submitted (23-JUL-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Takuji Sasaki
National Institute of Agrobiological Sciences, Rice Genome
Research Program; Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan
URL :http://rgp.dna.affrc.go.jp/
REFERENCE 2
AUTHORS Sasaki,T., Matsumoto,T. and Fujisawa,M.
TITLE Oryza sativa nipponbare(GA3) genomic DNA, chromosome 6, BAC
clone:OSJNBb0036B04
JOURNAL Published Only in Database(2004)
COMMENT Genes were predicted from the integrated results of the following:
GENSCAN (http://CCR-081.mit.edu/GENSCAN.html), FGENESH
(http://www.softberry.com/), GeneMark.hmm
(http://opal.biology.gatech.edu/GeneMark/), GlimmerM
(http://www.tigr.org/tdb/glimmerm/glmr_form.html), RiceHMM
(http://rgp.dna.affrc.go.jp/RiceHMM/), SplicePredictor
(http://bioinformatics.iastate.edu/cgi-bin/sp.cgi), sim4
(http://globin.cse.psu.edu/html/docs/sim4.html), gap2
(http://www.tigr.org/software/glimmerm/), BLASTN and BLASTX. The
genomic sequence was searched against NCBI NonRedundant Protein
database, nr (ftp://ncbi.nlm.nih.gov/blast/db) and the cDNA
sequence database at RGP or DDBJ. Protein homologies of the coding
regions were searched against NCBI NonRedundant Protein database
with BLASTP. ESTs represent the identified cDNA sequences using
BLASTN with the corresponding DDBJ accession no. and RGP clone ID.
Full-length cDNAs represent the identified cDNA sequences using
BLASTN with the corresponding DDBJ accession no.
A gene with identity or significant homology to a protein is
classified based on the protein name to indicate the homology
level such as same name, 'putative-' and '-like protein'. A gene
without significant homology to any protein but with full-length
cDNA or EST homology (covering almost the entire length of partial
sequence) is classified as an 'unknown' protein. A gene predicted
by two or more gene prediction programs is classified as a
'hypothetical' protein according to IRGSP standard. A gene
predicted by a single gene prediction program is also classified
as a probable 'hypothetical' protein and is included as a
miscellaneous feature of the sequence.
The orientation of the sequence is from -21M13 to M13rev of the
BAC clone. This sequence of OSJNBb0036B04 clone has an overlap
with OSJNBb0019L07 clone (DDBJ: AP007257) at 5' end and an overlap
with P0554A06 (DDBJ: AP005919) at 3' end. Detailed information on
overlap and assembly quality together with annotation of this
entry is available at http://rgp.dna.affrc.go.jp/GenomeSeq.html
FEATURES Qualifiers
source /chromosome="6"
/clone="OSJNBb0036B04"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="genomic DNA"
/organism="Oryza sativa Japonica Group"
protein /gene="OSJNBb0036B04.14"
/note="predicted by GeneMark.hmm etc."
intron_pos 24:2 (1/2)
intron_pos 63:1 (2/2)
BEGIN
1 MGMSGLMTGD KATRLHMIQC PVANFFSFLL PDLPAGCRAA SGAASSPSSS SSDDDSGVRS
61 MDASGDRRGW RRAVVRGADG RWAVVAEVGM METAVVAMVE TGVGRFQGPS MAALLVLILR
121 LRSRSEEVIS SQISTYYSGD DSDSDGTDDD
//