LOCUS BAD72533.1 1910 aa PRT PLN 16-FEB-2008
DEFINITION Oryza sativa Japonica Group putative callose synthase
1 catalytic subunit protein.
ACCESSION AP007226-2
PROTEIN_ID BAD72533.1
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 136159)
AUTHORS Sasaki,T., Matsumoto,T. and Fujisawa,M.
TITLE Direct Submission
JOURNAL Submitted (23-JUL-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Takuji Sasaki
National Institute of Agrobiological Sciences, Rice Genome
Research Program; Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan
URL :http://rgp.dna.affrc.go.jp/
REFERENCE 2
AUTHORS Sasaki,T., Matsumoto,T. and Fujisawa,M.
TITLE Oryza sativa nipponbare(GA3) genomic DNA, chromosome 6, BAC
clone:OSJNBb0036B04
JOURNAL Published Only in Database(2004)
COMMENT Genes were predicted from the integrated results of the following:
GENSCAN (http://CCR-081.mit.edu/GENSCAN.html), FGENESH
(http://www.softberry.com/), GeneMark.hmm
(http://opal.biology.gatech.edu/GeneMark/), GlimmerM
(http://www.tigr.org/tdb/glimmerm/glmr_form.html), RiceHMM
(http://rgp.dna.affrc.go.jp/RiceHMM/), SplicePredictor
(http://bioinformatics.iastate.edu/cgi-bin/sp.cgi), sim4
(http://globin.cse.psu.edu/html/docs/sim4.html), gap2
(http://www.tigr.org/software/glimmerm/), BLASTN and BLASTX. The
genomic sequence was searched against NCBI NonRedundant Protein
database, nr (ftp://ncbi.nlm.nih.gov/blast/db) and the cDNA
sequence database at RGP or DDBJ. Protein homologies of the coding
regions were searched against NCBI NonRedundant Protein database
with BLASTP. ESTs represent the identified cDNA sequences using
BLASTN with the corresponding DDBJ accession no. and RGP clone ID.
Full-length cDNAs represent the identified cDNA sequences using
BLASTN with the corresponding DDBJ accession no.
A gene with identity or significant homology to a protein is
classified based on the protein name to indicate the homology
level such as same name, 'putative-' and '-like protein'. A gene
without significant homology to any protein but with full-length
cDNA or EST homology (covering almost the entire length of partial
sequence) is classified as an 'unknown' protein. A gene predicted
by two or more gene prediction programs is classified as a
'hypothetical' protein according to IRGSP standard. A gene
predicted by a single gene prediction program is also classified
as a probable 'hypothetical' protein and is included as a
miscellaneous feature of the sequence.
The orientation of the sequence is from -21M13 to M13rev of the
BAC clone. This sequence of OSJNBb0036B04 clone has an overlap
with OSJNBb0019L07 clone (DDBJ: AP007257) at 5' end and an overlap
with P0554A06 (DDBJ: AP005919) at 3' end. Detailed information on
overlap and assembly quality together with annotation of this
entry is available at http://rgp.dna.affrc.go.jp/GenomeSeq.html
FEATURES Qualifiers
source /chromosome="6"
/clone="OSJNBb0036B04"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="genomic DNA"
/organism="Oryza sativa Japonica Group"
protein /gene="OSJNBb0036B04.3"
/note="contains full-length cDNA(s): AK100271"
intron_pos 99:1 (1/39)
intron_pos 133:0 (2/39)
intron_pos 173:2 (3/39)
intron_pos 206:0 (4/39)
intron_pos 243:0 (5/39)
intron_pos 286:0 (6/39)
intron_pos 338:2 (7/39)
intron_pos 383:0 (8/39)
intron_pos 429:0 (9/39)
intron_pos 454:2 (10/39)
intron_pos 484:0 (11/39)
intron_pos 527:0 (12/39)
intron_pos 565:1 (13/39)
intron_pos 677:0 (14/39)
intron_pos 694:2 (15/39)
intron_pos 715:0 (16/39)
intron_pos 742:1 (17/39)
intron_pos 759:0 (18/39)
intron_pos 788:0 (19/39)
intron_pos 819:2 (20/39)
intron_pos 848:0 (21/39)
intron_pos 901:2 (22/39)
intron_pos 943:0 (23/39)
intron_pos 974:2 (24/39)
intron_pos 1016:0 (25/39)
intron_pos 1066:2 (26/39)
intron_pos 1103:1 (27/39)
intron_pos 1145:1 (28/39)
intron_pos 1168:1 (29/39)
intron_pos 1231:2 (30/39)
intron_pos 1269:0 (31/39)
intron_pos 1309:0 (32/39)
intron_pos 1347:2 (33/39)
intron_pos 1375:2 (34/39)
intron_pos 1413:1 (35/39)
intron_pos 1490:0 (36/39)
intron_pos 1756:0 (37/39)
intron_pos 1773:0 (38/39)
intron_pos 1835:0 (39/39)
BEGIN
1 MTGPRGGGGE DPPRTSSGAA ASASASSGVP NEPLTPTSML MSGQQAGLNR RGSRSAAMAT
61 FSMEVFDNEV VPSTLSSIAP ILRVAAEIEP ERPRVAYLCR FYAFEKAHRL DQNSVGRGVR
121 QFKTALLQRL EKDNSPSLAK RVKKTDAREI ESFYQQYYEN YVRALDKGEQ ADRAQLGKAY
181 QTAGVLFEVL CAVNKNEKVE EVNPEIVRLH RDVQEKKDIY TPFNILPLDA ASASQSIMQM
241 EEIKAAVAAL RNTRGLTWPS TFEPERQKGG DLDLLDWLRA MFGFQRDSVR NQREHLILLL
301 ANVHIRLEPK PEPLSKACSF ATFYFADLTI WISMWIMKSP QGAQPQEIQQ RNILFLGLYL
361 LIWGEAANIR FMPECLCYIF HNMAYELNGL LAGNVSIVTG ENIRPSYGGD EEAFLKKVVT
421 PIYRVIKKES GKSKHGKTPH SAWCNYDDLN EYFWTTDCFS LGWPMRDDGD FFKSVHDSRP
481 VTTAGSSSQK GSTKSTGKMN FVETRTFWHI FRSFDRMWTF YLLALQAMLI FAWSDYTLSQ
541 ILQKDLLYSL SSIFVTAAFL QFLQSILDFV LNFPGHHKCK FLDAMRNILK IIASAAWAVI
601 LPFFYISTAS KVNLPIKDLD KWFQYVKGVP PLYILAVAVY LIPNILSAAL FLLPCFRRWI
661 ENSDWRIVRL LLWWSQKRIY VGRGMHESSV SLFKYTLFWI LLLCSKFAFS YFVQIKPLIK
721 PTKDIMNVHN IHYEWHEFFP NASYNVGAVM SLWAPVLLVY LMDTQIWYAI FSTISGGVSG
781 ALGRLGEVSP SKRTEAAKFA QLWNEVICSF REEDLISDKE MDLLVVPYSS DPSLKLMQWP
841 LFLLASKIPI ALDMAAQFRP RDSDLWKRIC ADEYMKCAVL ECYESFKLVL NLLVIGENEK
901 RIIGIIIKEI EANIAKNTFL ANFRMSALPV LCKKFVELVS ALKERDASKF DNVVLLLQDM
961 LEVITRDMMV NEIRELAEFG HGNKDSVPRR QLFAGTGTKP AIVFPPPISA QWDEQIKRLY
1021 LLLTVKESAM DVPTNLEARR RIAFFTNSLF MDMPRAPRVR KMLSFSVMTP YYSEETVYSR
1081 NDLDLENEDG VSIIFYLQKI FPDEWNNFLE RIGCQRESEV WGNEENVLQL RHWASLRGQT
1141 LCRTVRGMMY YKRALKLQAF LDMASESEIL EGYKAVADPA EEEKKSQRSL SSQLEAIADM
1201 KFTYVATCQI YGNQKQSGDR RATDILNLMV NYPGLRVAYI DEVEERDGEK VQKVFYSVLV
1261 KALDNHDQEI YRIKLPGPAK LGEGKPENQN HAIVFTRGEA LQTIDMNQDN YLEEALKMRN
1321 LLEEFHENHG VRQPTILGVR EHIFTGSVSS LAWFMSNQET SFVTIGQRVL ANPLKVRFHY
1381 GHPDVFDRIF HITRGGISKA SCGINLSEDI FAGFNSTLRR GNVTHHEYIQ VGKGRDVGLN
1441 QISLFEAKVA CGNGEQTLSR DIYRLGHRFD FFRMLSCYFT TVGFYISSMM VVIIVYVFLY
1501 GRLYLALSGL ELAIMKQARM RGNTALQAAM GSQSIVQLGL LMALPMFMEI GLERGFRSAL
1561 GDFIIMQLQL CSVFFTFSLG TKSHYFGRTI LHGGAKYKAT GRGFVVRHVK FPENYRMYSR
1621 SHFVKGLELM LLLVVYQMYG DVATDSTAYI LLTSSMWFLV ITWLFAPFLF NPSGFEWQKI
1681 VDDWDDWSKW ISSRGGIGVP ANKAWESWWE EEQEHLQSTG FFGRLSEIIL SLRFFIFQYG
1741 IMYHLNISAG NKSISVYGLS WLVIVAVVMV LKVVSMGRKK FSADFQLMFR LLKLFLFIGS
1801 IGTLAILFTL LHLTVGDIFA SFLAFAPTGW AILQISQASK PVVKAFGLWG SVKALSRGYE
1861 YLMGILIFVP VAVLAWFPFV SEFQTRLLFN QAFSRGLQIS RILAGGKKQS
//