LOCUS BAD72525.1 445 aa PRT PLN 16-FEB-2008 DEFINITION Oryza sativa Japonica Group putative hydroxycinnamoyl CoA quinate transferase protein. ACCESSION AP005919-20 PROTEIN_ID BAD72525.1 SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 165311) AUTHORS Sasaki,T., Matsumoto,T. and Katayose,Y. TITLE Direct Submission JOURNAL Submitted (21-NOV-2002) to the DDBJ/EMBL/GenBank databases. Contact:Takuji Sasaki National Institute of Agrobiological Sciences, Rice Genome Research Program; Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan URL :http://rgp.dna.affrc.go.jp/ REFERENCE 2 AUTHORS Sasaki,T., Matsumoto,T. and Katayose,Y. TITLE Oryza sativa nipponbare(GA3) genomic DNA, chromosome 6, PAC clone:P0554A06 JOURNAL Published Only in Database(2002) COMMENT Genes were predicted from the integrated results of the following: GENSCAN (http://CCR-081.mit.edu/GENSCAN.html), FGENESH (http://www.softberry.com/), GeneMark.hmm (http://opal.biology.gatech.edu/GeneMark/), GlimmerM (http://www.tigr.org/tdb/glimmerm/glmr_form.html), RiceHMM (http://rgp.dna.affrc.go.jp/RiceHMM/), SplicePredictor (http://bioinformatics.iastate.edu/cgi-bin/sp.cgi), sim4 (http://globin.cse.psu.edu/html/docs/sim4.html), gap2 (http://www.tigr.org/software/glimmerm/), BLASTN and BLASTX. The genomic sequence was searched against NCBI NonRedundant Protein database, nr (ftp://ncbi.nlm.nih.gov/blast/db) and the cDNA sequence database at RGP or DDBJ. Protein homologies of the coding regions were searched against NCBI NonRedundant Protein database with BLASTP. ESTs represent the identified cDNA sequences using BLASTN with the corresponding DDBJ accession no. and RGP clone ID. Full-length cDNAs represent the identified cDNA sequences using BLASTN with the corresponding DDBJ accession no. A gene with identity or significant homology to a protein is classified based on the protein name to indicate the homology level such as same name, 'putative-' and '-like protein'. A gene without significant homology to any protein but with full-length cDNA or EST homology (covering almost the entire length of partial sequence) is classified as an 'unknown' protein. A gene predicted by two or more gene prediction programs is classified as a 'hypothetical' protein according to IRGSP standard. A gene predicted by a single gene prediction program is also classified as a probable 'hypothetical' protein and is included as a miscellaneous feature of the sequence. The orientation of the sequence is from SP6 to T7 of the PAC clone. This sequence of P0554A06 clone has an overlap with OSJNBb0036B04 clone (DDBJ: AP007226) at 5' end and an overlap with P0568D10 (DDBJ: AP003489) at 3' end. Detailed information on overlap and assembly quality together with annotation of this entry is available at http://rgp.dna.affrc.go.jp/GenomeSeq.html FEATURES Qualifiers source /chromosome="6" /clone="P0554A06" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="genomic DNA" /organism="Oryza sativa Japonica Group" protein /gene="P0554A06.23" /note="contains full-length cDNA(s): AK109842" BEGIN 1 MAVEIVKSSM VTAGEATPEH RIWLSNLDLL VARSHTPTVY VYRRTGPDSD AAFFSPDVLK 61 AALSKVLVPF YPLAGRLAQD SAGRPEISCT GEGVLFVTAR SGATIDDLGD LAPSDELRRM 121 LVPAADVAAA SILAMFQVTF FRCGGVCLGA AIHHTAADGL AALDFVNTWA AIARDVAGDG 181 EAAAAAVQRP WLDRTLLRAR SPPAVRFDHA EYSRRRGGGS KLPFDSAILP MSKNQLNALK 241 GAGAGAGKRL STFTAVVAHV WRCACKARGL AVAGTEAATR LYMTADARTR LHPPLPRGYL 301 GNAIFRASAV SKVSDIVAAG PLGAVAEKVS AATARLDDGY VRSLLDHLEQ TAAAASGGAA 361 GLRKGEWVMP ESDLWVISWQ GLPLYDADFG WGRPAFMGRA CLQFSGLVYL VPGRDDGDGR 421 LDVVVAMDPE SLAKFKDVFY EELKC //