LOCUS       BAD46595.1               476 aa    PRT              PLN 16-FEB-2008
DEFINITION  Oryza sativa Japonica Group aspartic proteinase nepenthesin
            II -like protein.
ACCESSION   AP006149-34
PROTEIN_ID  BAD46595.1
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 171257)
  AUTHORS   Sasaki,T., Matsumoto,T. and Katayose,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-DEC-2002) to the DDBJ/EMBL/GenBank databases.
            Contact:Takuji Sasaki
            National Institute of Agrobiological Sciences, Rice Genome
            Research Program; Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan
            URL    :http://rgp.dna.affrc.go.jp/
REFERENCE   2
  AUTHORS   Sasaki,T., Matsumoto,T. and Katayose,Y.
  TITLE     Oryza sativa nipponbare(GA3) genomic DNA, chromosome 9, BAC
            clone:B1274F11
  JOURNAL   Published Only in Database(2002)
COMMENT     Genes were predicted from the integrated results of the following:
            GENSCAN (http://CCR-081.mit.edu/GENSCAN.html), FGENESH
            (http://www.softberry.com/), GeneMark.hmm
            (http://opal.biology.gatech.edu/GeneMark/), GlimmerM
            (http://www.tigr.org/tdb/glimmerm/glmr_form.html), RiceHMM
            (http://rgp.dna.affrc.go.jp/RiceHMM/), SplicePredictor
            (http://bioinformatics.iastate.edu/cgi-bin/sp.cgi), sim4
            (http://globin.cse.psu.edu/html/docs/sim4.html), gap2
            (http://www.tigr.org/software/glimmerm/), BLASTN and BLASTX. The
            genomic sequence was searched against NCBI NonRedundant Protein
            database, nr (ftp://ncbi.nlm.nih.gov/blast/db) and the cDNA
            sequence database at RGP or DDBJ. Protein homologies of the coding
            regions were searched against NCBI NonRedundant Protein database
            with BLASTP. ESTs represent the identified cDNA sequences using
            BLASTN with the corresponding DDBJ accession no. and RGP clone ID.
            Full-length cDNAs represent the identified cDNA sequences using
            BLASTN with the corresponding DDBJ accession no.
            
            A gene with identity or significant homology to a protein is
            classified based on the protein name to indicate the homology
            level such as same name, 'putative-' and '-like protein'.  A gene
            without significant homology to any protein but with full-length
            cDNA or EST homology (covering almost the entire length of partial
            sequence) is classified as an 'unknown' protein. A gene predicted
            by two or more gene prediction programs is classified as a
            'hypothetical' protein according to IRGSP standard. A gene
            predicted by a single gene prediction program is also classified
            as a probable 'hypothetical' protein and is included as a
            miscellaneous feature of the sequence.
            
            The orientation of the sequence is from -21M13 to M13rev of the
            BAC clone. This sequence of B1274F11 has an overlap with
            P0229B10(DDBJ: AP006174) clone at 5' end and with P0478E02(DDBJ:
            AB109206) clone at 3' end. Detailed information on overlap and
            assembly quality together with annotation of this entry is
            available at http://rgp.dna.affrc.go.jp/GenomeSeq.html
FEATURES             Qualifiers
     source          /chromosome="9"
                     /clone="B1274F11"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="genomic DNA"
                     /organism="Oryza sativa Japonica Group"
     protein         /gene="B1274F11.42"
                     /note="contains full-length cDNA(s): AK105001"
     intron_pos      54:2 (1/10)
     intron_pos      60:2 (2/10)
     intron_pos      105:0 (3/10)
     intron_pos      183:2 (4/10)
     intron_pos      258:2 (5/10)
     intron_pos      304:0 (6/10)
     intron_pos      328:2 (7/10)
     intron_pos      362:0 (8/10)
     intron_pos      381:1 (9/10)
     intron_pos      405:1 (10/10)
BEGIN
        1 MVGGGGGVVV VRAVLLLLAA VAAAEALSLD VHHRYSAAVR RWAAAAAPPH GTADLNDFGF
       61 LHYAVVALGT PNVTFLVALD TGSDLFWVPC DCLKCAPFQS PNYGSLKFDV YSPAQSTTSR
      121 KVPCSSNLCD LQNACRSKSN SCPYSIQYLS DNTSSSGVLV EDVLYLTSDS AQSKIVTAPI
      181 MFGCGQVQTG SFLGSAAPNG LLGLGMDSKS VPSLLASKGL AANSFSMCFG DDGHGRINFG
      241 DTGSSDQKET PLNVYKQNPY YNITITGITV GSKSISTEFS AIVDSGTSFT ALSDPMYTQI
      301 TSSFDAQIRS SRNMLDSSMP FEFCYSVSAN GIVHPNVSLT AKGGSIFPVN DPIITITDNA
      361 FNPVGYCLAI MKSEGVNLIG ENFMSGLKVV FDRERMVLGW KNFNCYNFDE SSRLPVNPSP
      421 SAVPSKPGLG PSSYTPEAAK GALPNGTQVN VMPSASSPLQ PQSVSATIVL LFLIVL
//