LOCUS BAD46568.1 414 aa PRT PLN 16-FEB-2008 DEFINITION Oryza sativa Japonica Group minichromosome maintenance protein 10 isoform 1 -like protein. ACCESSION AP006149-7 PROTEIN_ID BAD46568.1 SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 171257) AUTHORS Sasaki,T., Matsumoto,T. and Katayose,Y. TITLE Direct Submission JOURNAL Submitted (26-DEC-2002) to the DDBJ/EMBL/GenBank databases. Contact:Takuji Sasaki National Institute of Agrobiological Sciences, Rice Genome Research Program; Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan URL :http://rgp.dna.affrc.go.jp/ REFERENCE 2 AUTHORS Sasaki,T., Matsumoto,T. and Katayose,Y. TITLE Oryza sativa nipponbare(GA3) genomic DNA, chromosome 9, BAC clone:B1274F11 JOURNAL Published Only in Database(2002) COMMENT Genes were predicted from the integrated results of the following: GENSCAN (http://CCR-081.mit.edu/GENSCAN.html), FGENESH (http://www.softberry.com/), GeneMark.hmm (http://opal.biology.gatech.edu/GeneMark/), GlimmerM (http://www.tigr.org/tdb/glimmerm/glmr_form.html), RiceHMM (http://rgp.dna.affrc.go.jp/RiceHMM/), SplicePredictor (http://bioinformatics.iastate.edu/cgi-bin/sp.cgi), sim4 (http://globin.cse.psu.edu/html/docs/sim4.html), gap2 (http://www.tigr.org/software/glimmerm/), BLASTN and BLASTX. The genomic sequence was searched against NCBI NonRedundant Protein database, nr (ftp://ncbi.nlm.nih.gov/blast/db) and the cDNA sequence database at RGP or DDBJ. Protein homologies of the coding regions were searched against NCBI NonRedundant Protein database with BLASTP. ESTs represent the identified cDNA sequences using BLASTN with the corresponding DDBJ accession no. and RGP clone ID. Full-length cDNAs represent the identified cDNA sequences using BLASTN with the corresponding DDBJ accession no. A gene with identity or significant homology to a protein is classified based on the protein name to indicate the homology level such as same name, 'putative-' and '-like protein'. A gene without significant homology to any protein but with full-length cDNA or EST homology (covering almost the entire length of partial sequence) is classified as an 'unknown' protein. A gene predicted by two or more gene prediction programs is classified as a 'hypothetical' protein according to IRGSP standard. A gene predicted by a single gene prediction program is also classified as a probable 'hypothetical' protein and is included as a miscellaneous feature of the sequence. The orientation of the sequence is from -21M13 to M13rev of the BAC clone. This sequence of B1274F11 has an overlap with P0229B10(DDBJ: AP006174) clone at 5' end and with P0478E02(DDBJ: AB109206) clone at 3' end. Detailed information on overlap and assembly quality together with annotation of this entry is available at http://rgp.dna.affrc.go.jp/GenomeSeq.html FEATURES Qualifiers source /chromosome="9" /clone="B1274F11" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="genomic DNA" /organism="Oryza sativa Japonica Group" protein /gene="B1274F11.8" intron_pos 125:2 (1/8) intron_pos 205:0 (2/8) intron_pos 246:2 (3/8) intron_pos 258:0 (4/8) intron_pos 273:2 (5/8) intron_pos 317:2 (6/8) intron_pos 339:1 (7/8) intron_pos 363:2 (8/8) BEGIN 1 MATAAAADDL DLLLSLDADG GEAVLETPPS SPRRDAATAA AFTPPRAVRP GGTDMSVFRD 61 AVKDYLDATP AAVATSLPKG KRPPKSTETI VDAHSGLRIR SLTASPLEIT NRFADIRFVR 121 ISAIRNLAGG DSFSGCWATA GVVLDKGAPR VSAQGKEYSI WKMGALDDAD VSVFLFGDAH 181 AHHSGAAVGA VFALFNGNVR MDNGGRGFSV SVASVGQMMK MGVSADFGIC KGKRKDGMGC 241 TMAINKRKGS YCKFHSSKSS QKYSTGRVEL KGGNFKFASK LRSEGIYMVN PLERSNSRNP 301 LQPVKVMSID GLKRALSNAD RVTAKSQSQG IRFLSHVTGN IESNLSSNGS TNPQTSRFSS 361 NKRSTSCSTK SMPKPGLQKQ EQDNKKMKMT CPPKKTIELD DVSSDDEISI VLRR //