LOCUS BAD22041.1 843 aa PRT PLN 16-FEB-2008
DEFINITION Oryza sativa Japonica Group HGWP repeat containing protein-
like protein.
ACCESSION AP005303-16
PROTEIN_ID BAD22041.1
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 134907)
AUTHORS Sasaki,T., Matsumoto,T. and Katayose,Y.
TITLE Direct Submission
JOURNAL Submitted (29-MAY-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Takuji Sasaki
National Institute of Agrobiological Sciences, Rice Genome
Research Program; Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan
URL :http://rgp.dna.affrc.go.jp/
REFERENCE 2
AUTHORS Sasaki,T., Matsumoto,T. and Katayose,Y.
TITLE Oryza sativa nipponbare(GA3) genomic DNA, chromosome 2, PAC
clone:P0016F11
JOURNAL Published Only in Database(2002)
COMMENT Genes were predicted from the integrated results of the following:
GENSCAN (http://CCR-081.mit.edu/GENSCAN.html), FGENESH
(http://www.softberry.com/), GeneMark.hmm
(http://opal.biology.gatech.edu/GeneMark/), GlimmerM
(http://www.tigr.org/tdb/glimmerm/glmr_form.html), RiceHMM
(http://rgp.dna.affrc.go.jp/RiceHMM/), SplicePredictor
(http://bioinformatics.iastate.edu/cgi-bin/sp.cgi), sim4
(http://globin.cse.psu.edu/html/docs/sim4.html), gap2
(http://www.tigr.org/software/glimmerm/), BLASTN and BLASTX. The
genomic sequence was searched against NCBI NonRedundant Protein
database, nr (ftp://ncbi.nlm.nih.gov/blast/db) and the cDNA
sequence database at RGP or DDBJ. Protein homologies of the coding
regions were searched against NCBI NonRedundant Protein database
with BLASTP. ESTs represent the identified cDNA sequences using
BLASTN with the corresponding DDBJ accession no. and RGP clone ID.
Full-length cDNAs represent the identified cDNA sequences using
BLASTN with the corresponding DDBJ accession no.
A gene with identity or significant homology to a protein is
classified based on the protein name to indicate the homology
level such as same name, 'putative-' and '-like protein'. A gene
without significant homology to any protein but with full-length
cDNA or EST homology (covering almost the entire length of partial
sequence) is classified as an 'unknown' protein. A gene predicted
by two or more gene prediction programs is classified as a
'hypothetical' protein according to IRGSP standard. A gene
predicted by a single gene prediction program is also classified
as a probable 'hypothetical' protein and is included as a
miscellaneous feature of the sequence.
The orientation of the sequence is from SP6 to T7 of the PAC
clone. This sequence of P0016F11 clone has an overlap with
OJ1116_E04 (DDBJ: AP004081) clone at 5' end and with OSJNBa0053L11
(DDBJ: AP005691) at 3' end. Detailed information on overlap and
assembly quality together with annotation of this entry is
available at http://rgp.dna.affrc.go.jp/GenomeSeq.html
FEATURES Qualifiers
source /chromosome="2"
/clone="P0016F11"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="genomic DNA"
/organism="Oryza sativa Japonica Group"
protein /gene="P0016F11.29"
intron_pos 341:2 (1/1)
BEGIN
1 MGVHVFADRL AFAAADWCFC LHGWPIMPPL LGVYDFTTGL PPSPPTGVLA YTVGWSHHRS
61 WASTSSPTGW PSPPPTGVSA YTVGLLCHRC WASTTSPPAC LRRRRLVPPP TRVAYYAAAV
121 GRLRLHRRPA FAAADWCFRL HGWPIMPPLL GVYDFTAGLS PSPPSGASAY TAGLLCRRCW
181 ASTTSPPAYL RRRRVVPPPT RLAYYAAAVG RLRLHRRPAS VAAEWCLRLH GWPIMPPLLG
241 VYDFTAGLPP SPPSGASAYT AGLLCRRCWM STSSLLAHLR CRRLVFPLTR LTYYAAISGH
301 LRFHRRPPSS PPTGVFIVID GRLCSHIGHF CHHQGEYYKA KNGSVRTSPP ARLDRRRLVF
361 PPARLAFMPP LLGVYVFTDR LAFAAADWCF RLHGWPLCRR CWASTSSPTG RLVRRRLVLP
421 PARLAYYAAV VGRLRLHRPA ASSAADWCFR LHGWPIMPPL LGVYVFTDRL AFAAADWCFR
481 LHGWPIMPPL LGVYVFTDRP PRPPPTGASA CTAGLLCRRC WASTSSPTGL PSPPPTGVSA
541 CTAGLYATVV GRLRLHRLAC LRRCRLVFPP ARLAFMPPLL GVYVFTDRLA FAAADWCFRL
601 HGWPLCRRCW ASTSSPTGLP SPPPTGVSAC TAGLLCRRCW ASTSSPTGRL VRRRLVLPPA
661 RLAYYAAVVG RIRLHRPACL RRCRLVFPPA RLAFMPPLLG VYVFTDRLAF AAADWCFRLH
721 GWPLCHRCWA STSSPTGLPS PPPTGVSACT AGLYAAVVGR LRLHRPACLR RRRLVFPPAR
781 LAFMPPLLGV YVFTDRLAFA AADWCFRLHG WPIMLPLLGV YVFTGRPPHP PLTDVTASTA
841 GLL
//